PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_17672g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 427aa MW: 47520.1 Da PI: 6.5017 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51 | 3.3e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ ++q+G+g +W + +++ g++R++k+c++rw++yl MA_17672g0010 14 KGPWSPEEDAKLKAFIEQHGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 33.5 | 1e-10 | 70 | 111 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++++Ed ++ + + G++ W+ Ia+ ++ gRt++++k++w++ MA_17672g0010 70 GFSEDEDSIICGLYASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 69******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.714 | 9 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.56E-26 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.9E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.0E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.10E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 15.503 | 67 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 7.1E-9 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-9 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-22 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDAKLKAFIE QHGTGGNWIA LPQKAGLKRC GKSCRLRWLN 60 YLRPDIRHGG FSEDEDSIIC GLYASIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK 120 RKEQQTRRFK EAKSMSNGAG PYVSEGMSAA SSTINAIRSL MSNTEALYLS DRMPHMDMDP 180 SLGLLNPQFL QHTVSNIANY CSSSEHVSFG TGPPQGLDQE LTFDNASLRK LLFRTECAFT 240 ADNNNNTSQA SPPIISSQIY SPSTILDPGL VQDSFEKSCM NINVKEEPVA GALDHHHIDY 300 LASMTLRDSC SSTEGNYIQS PWLYQNGLQD HSCLSYEFPM EQMNEGIYWN SASSSLQGHH 360 EKEELCAYSS YKESTRHADE PTTTFWGAQL PCNYPKPMSD CPNYFSVAPS DANQQGSSRS 420 QEAGIIY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-24 | 14 | 117 | 7 | 108 | B-MYB |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT109118 | 0.0 | BT109118.1 Picea glauca clone GQ03204_O05 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027362138.1 | 2e-82 | transcription factor RAX3-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65790.1 | 9e-72 | myb domain protein 68 |