PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_175772g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 383aa MW: 43347.8 Da PI: 6.8415 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.5 | 7.5e-14 | 59 | 106 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed +l d+++ +G W+ +r+ g++R++k+c++rw +yl MA_175772g0010 59 RGAWTKVEDMILSDYIRSHGDSEWRNLPRKAGLKRCGKSCRLRWKNYL 106 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.1 | 5.4e-15 | 112 | 155 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ +++E++l+ +++++lG++ W++Ia +++ gRt++++k++w++ MA_175772g0010 112 RGNISQDEEDLIFRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 155 7899******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-20 | 50 | 109 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.52 | 54 | 106 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.48E-25 | 56 | 153 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.7E-11 | 58 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-11 | 59 | 106 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.06E-8 | 61 | 106 | No hit | No description |
PROSITE profile | PS51294 | 24.873 | 107 | 161 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-23 | 110 | 161 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.4E-15 | 111 | 159 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-13 | 112 | 155 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.04E-10 | 116 | 157 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MAITTVFTGE NLIVVSIYTR RPIERTSDKA RGDRQLWNYR RRRSTMGRSP CCSKQGLNRG 60 AWTKVEDMIL SDYIRSHGDS EWRNLPRKAG LKRCGKSCRL RWKNYLRPDI KRGNISQDEE 120 DLIFRLHRLL GNRWSLIAGR LPGRTDNEIK NYWNTRLSKK LLSMDDSQPN FTTQDLKSSS 180 LQSHVLKTSP IKTVAVRFPE MVIPNPNNGY GRSNCSSSEA FKLCNGKEGT NSSKSWSDLL 240 LKESSTHDDF DCTAFAMADI GILETEVENS ACSIWSLADE KPPHSHYFAR DAATLAESLS 300 NLNDLSSPDC NLLTSPSDCL TYFGLEEFYN DPAALPAGAN EFECIPSDQS YMQSINIFTV 360 ADDQIIDEPI TDHMQIGFMN LIV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-26 | 57 | 161 | 5 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT102805 | 0.0 | BT102805.1 Picea glauca clone GQ02016_I19 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002279900.1 | 2e-69 | PREDICTED: transcription factor TT2 | ||||
TrEMBL | A0A167V911 | 1e-127 | A0A167V911_PICAB; Transcription factor MYB31 | ||||
STRING | VIT_04s0008g01820.t01 | 1e-68 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 2e-64 | myb domain protein 3 |