PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_175298g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

Dof

Protein Properties

Length: 545aa MW: 58463.8 Da PI: 5.9325

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_175298g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.5	8.1e-40	130	190	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k l+cprCds +tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s+ MA_175298g0010 130 PDKLLPCPRCDSLDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHST 190 78999*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	3.0E-32	132	188	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.929	134	188	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	136	172	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-23	138	187	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence Send to blast
MKDPGFKLFG KTIPMRDGEK SEGLSGSKLG HENTDNTTET PARVAPVSDK DVGKEMSPEP 60 ELEGPHDSNP EETRSVTVIS DCGEDECKKS VEDLEREGGT TSTENDLKGE NIEEKEAKAS 120 ENQDKMLKKP DKLLPCPRCD SLDTKFCYYN NYNVNQPRHF CKNCQRYWTA GGTMRNVPVG 180 AGRRKNKHST SHYRHMMMAD GLATARADAP DAAAHHQVIS NAHSSSRVLK GSQIQLLPLD 240 VESAGGTILN FGPDFPLCES MSTALNLADQ TVVTRKSFKN KDDEKGPLIC GENRDDTSCE 300 SSITASTTTE KEEASKIFHT IPQMDQGGMV GWPSSVPPQQ HYYGGGPWAY GWNFCWGGRS 360 ATGCPSGIPY AAESGNTSAG SWNNGTSGAG PPGMWAAGIP WPFVPGPYWA SPTGWGGGTW 420 NTPFPTLASP ATGGLSSCPS LSSASSSGSA TLGKHSRDIS QSEGKPDGCL WVPKTIRIDD 480 PDEAARSSIW STLGIGNKPE SITTGGIFKA FQPKTEEKDL VKASTQGLLS NPAAHSRSMA 540 FREST

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence Send to blast

MKDPGFKLFG KTIPMRDGEK SEGLSGSKLG HENTDNTTET PARVAPVSDK DVGKEMSPEP  60
ELEGPHDSNP EETRSVTVIS DCGEDECKKS VEDLEREGGT TSTENDLKGE NIEEKEAKAS  120
ENQDKMLKKP DKLLPCPRCD SLDTKFCYYN NYNVNQPRHF CKNCQRYWTA GGTMRNVPVG  180
AGRRKNKHST SHYRHMMMAD GLATARADAP DAAAHHQVIS NAHSSSRVLK GSQIQLLPLD  240
VESAGGTILN FGPDFPLCES MSTALNLADQ TVVTRKSFKN KDDEKGPLIC GENRDDTSCE  300
SSITASTTTE KEEASKIFHT IPQMDQGGMV GWPSSVPPQQ HYYGGGPWAY GWNFCWGGRS  360
ATGCPSGIPY AAESGNTSAG SWNNGTSGAG PPGMWAAGIP WPFVPGPYWA SPTGWGGGTW  420
NTPFPTLASP ATGGLSSCPS LSSASSSGSA TLGKHSRDIS QSEGKPDGCL WVPKTIRIDD  480
PDEAARSSIW STLGIGNKPE SITTGGIFKA FQPKTEEKDL VKASTQGLLS NPAAHSRSMA  540
FREST

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC688684	0.0	KC688684.1 Pinus pinaster Dof10 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	T2B8P6	0.0	T2B8P6_PINPS; Dof10

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-39	cycling DOF factor 2