PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_173384g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | NAC | ||||||||
Protein Properties | Length: 132aa MW: 14805 Da PI: 4.4221 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 55.5 | 1.9e-17 | 6 | 56 | 1 | 50 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkk 50 lp GfrFhPtdeel+ +yLk k+++ ++ evi+evd+y++ePwdLp + MA_173384g0010 6 LPSGFRFHPTDEELIFNYLKGKLKNGLkASEVEVIPEVDLYRCEPWDLPVH 56 699*******************998764555689**************942 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.24E-16 | 3 | 56 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 14.483 | 6 | 132 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.5E-7 | 7 | 51 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
METFALPSGF RFHPTDEELI FNYLKGKLKN GLKASEVEVI PEVDLYRCEP WDLPVHSTEI 60 AVLERGRTCE GDLHGEASCV TGVLCYFGLL ELQSINDVGC MLEGIFYSRR VQIPMPMNCI 120 NYGGDTVMEA HS |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT115239 | 0.0 | BT115239.1 Picea glauca clone GQ03612_E09 mRNA sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP18543 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17260.1 | 1e-16 | NAC domain containing protein 86 |