PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_171937g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NF-YA

Protein Properties

Length: 389aa MW: 45624.4 Da PI: 10.2179

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_171937g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	24.2	1.1e-07	29	58	4	34
CBFB_NFYA 4 lYVNaKQyqrIlkRRqkRakleeekkldeks 34 ++VNaKQy++IlkRR + k e+++ + MA_171937g0010 29 VWVNAKQYRGILKRRLAHLKWEQTREK-RSQ 58 89*****************99994432.222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51152	10.438	25	93	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	6.4E-6	29	68	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MGQETLEPVE TNDIGQVKIA SSAKTEKWVW VNAKQYRGIL KRRLAHLKWE QTREKRSQRE 60 STWVLRKKQH SNKSSLQVCG NKSKGKGKVI DDYALYSPTS TPLTWSFDLY VKELLKVKER 120 LEVVEAKELK RDCIIHRIIA ENQDLEENNK VLKEQVSLLQ EALRMGKTKW QCMKEEVKNM 180 KKIAVENTEV MNAKPSQDKE KVVTQIDNNE ETSREDRKGD SAKLSKTWTQ IISNPSKREG 240 ERNIQVDNMQ DRERKEKHDR ATNIIIKGVK DYWKNECTLD LARDFLKDKL QWQGQICQAW 300 RVGKPNGERA RPIKVIFPNL CDKEIILSKK HFLRGSQFFL EEDLTVRQQE ERRDEMTKVR 360 ATRDEGKIAW IYKGKAMIVQ FGPPSKTRQ

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MGQETLEPVE TNDIGQVKIA SSAKTEKWVW VNAKQYRGIL KRRLAHLKWE QTREKRSQRE  60
STWVLRKKQH SNKSSLQVCG NKSKGKGKVI DDYALYSPTS TPLTWSFDLY VKELLKVKER  120
LEVVEAKELK RDCIIHRIIA ENQDLEENNK VLKEQVSLLQ EALRMGKTKW QCMKEEVKNM  180
KKIAVENTEV MNAKPSQDKE KVVTQIDNNE ETSREDRKGD SAKLSKTWTQ IISNPSKREG  240
ERNIQVDNMQ DRERKEKHDR ATNIIIKGVK DYWKNECTLD LARDFLKDKL QWQGQICQAW  300
RVGKPNGERA RPIKVIFPNL CDKEIILSKK HFLRGSQFFL EEDLTVRQQE ERRDEMTKVR  360
ATRDEGKIAW IYKGKAMIVQ FGPPSKTRQ