PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_170639g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 659aa    MW: 69010.5 Da    PI: 6.8373
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_170639g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.46.5e-07382403223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      C++Cgk F+r  nL+ H+r H
  MA_170639g0010 382 FCEICGKGFKRDANLRMHMRGH 403
                     6*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.08E-5378405No hitNo description
PROSITE profilePS5015712.113381408IPR007087Zinc finger, C2H2
SMARTSM003550.0026381403IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280383403IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-5383407IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035567430463IPR015880Zinc finger, C2H2-like
SMARTSM0035526468490IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010044Biological Processresponse to aluminum ion
GO:0010447Biological Processresponse to acidic pH
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MMAGQVMEPP STSPKSEGED DESKFSLLGQ QFSRYGSAAQ SQGQSSQEAS ISFSLVPPMP  60
HNQVALNSHC QQSLANSSHG GSDGGNGGSF SDVLHQLIPP LQGYSLAYGA HHTNQNIGES  120
SGSSGNPSPA CNPQVLLNTL SVLQRKIFQL QSLVQLMAQE DGQSGQSSVM MSQQQAVTTS  180
VASIISQLMV AAAGMLPLSQ QPGLNLFSTT TAGDLQLGHL LRGGLGLGLN AFQQNGAGNS  240
AMGPVNGPVG ANNIFSLEGS SRGSNMGGLA ISHSVQPQNP LGTSNSTHGI GTSINVGSSD  300
GKVLGGVTEA NDCDNGNGIA NQAGDSLFTS QRSGGPGSGD DNDFGGNGRD EDDDGEGENL  360
PPGSYQLVEM DAVEILAEHT HFCEICGKGF KRDANLRMHM RGHGDEYKTP AALARPDKAQ  420
DSAPAQPRRY SCPFVGCKRN KKHKKFQPLK TMLCVKNHYR RSHCPKMYTC NRCKNKKFSV  480
VADLKTHEKH CGRDKWLCSC GTTFSRKDKL FGHITLFQGH TPVSSPAEME GAALQDQVGN  540
NGGAPNTGNS VSGFANARGN VSGILAGPEV VGSIHSNSNV PSIGPGVNGT VLESSNGAVH  600
SQIGLKNIGF SEDDNPHSMV VDSSNQMSGF PQATSALMPG PFTFQSLLSN NFLQQGRGN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00196ampDAPTransfer from AT1G34370Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1040950.0BT104095.1 Picea glauca clone GQ02806_G04 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8301663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.35e-91C2H2 family protein