PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_170639g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | C2H2 | ||||||||
Protein Properties | Length: 659aa MW: 69010.5 Da PI: 6.8373 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.4 | 6.5e-07 | 382 | 403 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H MA_170639g0010 382 FCEICGKGFKRDANLRMHMRGH 403 6*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.08E-5 | 378 | 405 | No hit | No description |
PROSITE profile | PS50157 | 12.113 | 381 | 408 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0026 | 381 | 403 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 383 | 403 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.1E-5 | 383 | 407 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 67 | 430 | 463 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 26 | 468 | 490 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010044 | Biological Process | response to aluminum ion | ||||
GO:0010447 | Biological Process | response to acidic pH | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 659 aa Download sequence Send to blast |
MMAGQVMEPP STSPKSEGED DESKFSLLGQ QFSRYGSAAQ SQGQSSQEAS ISFSLVPPMP 60 HNQVALNSHC QQSLANSSHG GSDGGNGGSF SDVLHQLIPP LQGYSLAYGA HHTNQNIGES 120 SGSSGNPSPA CNPQVLLNTL SVLQRKIFQL QSLVQLMAQE DGQSGQSSVM MSQQQAVTTS 180 VASIISQLMV AAAGMLPLSQ QPGLNLFSTT TAGDLQLGHL LRGGLGLGLN AFQQNGAGNS 240 AMGPVNGPVG ANNIFSLEGS SRGSNMGGLA ISHSVQPQNP LGTSNSTHGI GTSINVGSSD 300 GKVLGGVTEA NDCDNGNGIA NQAGDSLFTS QRSGGPGSGD DNDFGGNGRD EDDDGEGENL 360 PPGSYQLVEM DAVEILAEHT HFCEICGKGF KRDANLRMHM RGHGDEYKTP AALARPDKAQ 420 DSAPAQPRRY SCPFVGCKRN KKHKKFQPLK TMLCVKNHYR RSHCPKMYTC NRCKNKKFSV 480 VADLKTHEKH CGRDKWLCSC GTTFSRKDKL FGHITLFQGH TPVSSPAEME GAALQDQVGN 540 NGGAPNTGNS VSGFANARGN VSGILAGPEV VGSIHSNSNV PSIGPGVNGT VLESSNGAVH 600 SQIGLKNIGF SEDDNPHSMV VDSSNQMSGF PQATSALMPG PFTFQSLLSN NFLQQGRGN |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00196 | ampDAP | Transfer from AT1G34370 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT104095 | 0.0 | BT104095.1 Picea glauca clone GQ02806_G04 mRNA sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP830 | 16 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.3 | 5e-91 | C2H2 family protein |