PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_170369g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | LBD | ||||||||
Protein Properties | Length: 193aa MW: 21318.2 Da PI: 6.5042 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122.6 | 2.1e-38 | 28 | 127 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C ++ vlapyfp+++ +kfa +h++FGasn++kll++l e r da+s +vyeA+ar+rdPvyG++g+++++q+ql+ql+++la MA_170369g0010 28 PCAACKILRRRCREKFVLAPYFPSNDLHKFATAHRIFGASNIIKLLQELLAEGRADAVSNMVYEANARLRDPVYGCAGIVFQMQSQLSQLQSQLA 122 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e MA_170369g0010 123 TAQAE 127 *9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.971 | 27 | 128 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.9E-37 | 28 | 125 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MAPSHQTFSE LPQMASNVGG FRAHAPSPCA ACKILRRRCR EKFVLAPYFP SNDLHKFATA 60 HRIFGASNII KLLQELLAEG RADAVSNMVY EANARLRDPV YGCAGIVFQM QSQLSQLQSQ 120 LATAQAEILT MRLQQANFLA LITGSADSGK TTRPLSPSSN AISQESNDQQ TDLIYFEGED 180 PLQLWDDSVW TQL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-35 | 27 | 129 | 10 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-35 | 27 | 129 | 10 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF084557 | 0.0 | EF084557.1 Picea sitchensis clone WS0271_N08 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009409552.1 | 2e-59 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 4e-53 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A9NTB0 | 1e-112 | A9NTB0_PICSI; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P15500_001 | 6e-59 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 1e-45 | LOB domain-containing protein 1 |