PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_16891g0020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | LBD | ||||||||
Protein Properties | Length: 245aa MW: 26671.3 Da PI: 8.4905 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125 | 3.7e-39 | 41 | 138 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk+ r+ C+++Cv+apyfp +qp+kfa vhk+FGasn+ kll++lp+++reda+ssl+yeAear++dPvy +vg i+ lq q++ql+ ++++ MA_16891g0020 41 PCAACKFPRK-CTAECVFAPYFPPKQPHKFASVHKIFGASNIDKLLNELPPHQREDAASSLAYEAEARVKDPVYDCVGAISPLQGQVQQLQRDIEE 135 7******998.**********************************************************************************999 PP DUF260 97 lke 99 +++ MA_16891g0020 136 ARA 138 886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.565 | 40 | 140 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.9E-38 | 41 | 137 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MMNMVLGSTG TFFKGNNISS KQTTSSSSSA SGSCSSSSSS PCAACKFPRK CTAECVFAPY 60 FPPKQPHKFA SVHKIFGASN IDKLLNELPP HQREDAASSL AYEAEARVKD PVYDCVGAIS 120 PLQGQVQQLQ RDIEEARADL ARYIAMEMGM QGIHGVPVHH SSHRLLELRR ERVLELARLQ 180 RSGGPCSEAL GLAAAAGIYN ITTSSPCLPT HPTSPYSLSL PTHPPPTCTP THTRWREFIR 240 WGVYI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-51 | 35 | 149 | 5 | 120 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-51 | 35 | 149 | 5 | 120 | LOB family transfactor Ramosa2.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024361359.1 | 3e-56 | protein LATERAL ORGAN BOUNDARIES-like | ||||
TrEMBL | A0A2K1INT7 | 6e-55 | A0A2K1INT7_PHYPA; Uncharacterized protein | ||||
STRING | PP1S71_7V6.1 | 1e-55 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 4e-52 | LOB domain-containing protein 25 |