PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_16891g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | LBD | ||||||||
Protein Properties | Length: 235aa MW: 24253.9 Da PI: 7.1523 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.3 | 1.1e-42 | 22 | 120 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk+lrrkC+ +C++apyfp eqp+kfa vhk+FGa ++kll++l++e+reda+ssl+yeAear++dPvyG+vg i+ lq q++ql+ ela+ MA_16891g0010 22 PCAACKFLRRKCTVECIFAPYFPPEQPHKFASVHKIFGAXXISKLLNELSPEQREDAVSSLAYEAEARVKDPVYGCVGAISVLQGQVQQLQRELAE 117 7**********************************************************************************************9 PP DUF260 97 lke 99 +++ MA_16891g0010 118 ARA 120 987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.012 | 21 | 122 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-41 | 22 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MAASSSTSSS ASASGSSTAS SPCAACKFLR RKCTVECIFA PYFPPEQPHK FASVHKIFGA 60 XXISKLLNEL SPEQREDAVS SLAYEAEARV KDPVYGCVGA ISVLQGQVQQ LQRELAEARA 120 DLAHYTAMEM GIQGIHGVPV HHSSQGLLEL RRERILELAR LQGSGGPCSE ALGAAAAAGI 180 YNIASCPPPP LLPPTHPPPA CTTCTTIASE GGSGCSSGGG GVGNSGSIRH YSSPP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-54 | 19 | 131 | 8 | 120 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-54 | 19 | 131 | 8 | 120 | LOB family transfactor Ramosa2.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT119359 | 0.0 | BT119359.1 Picea glauca clone GQ04104_K10 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024403438.1 | 4e-59 | LOB domain-containing protein 6-like | ||||
TrEMBL | A0A2K1IZ18 | 9e-58 | A0A2K1IZ18_PHYPA; Uncharacterized protein | ||||
STRING | PP1S170_78V6.1 | 2e-58 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63090.4 | 1e-57 | LBD family protein |