PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_16778g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 621aa    MW: 69213.6 Da    PI: 5.1707
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_16778g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.9e-18173223155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    + y+GVr++  +g+WvAeIr+p   + r  r +lg+f +aeeAa a+++a++ ++g
  MA_16778g0010 173 CNYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFSSAEEAALAYDQAARVMYG 223
                    56*****999.**********8...3.35**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.49E-30173232No hitNo description
PfamPF008471.4E-12173223IPR001471AP2/ERF domain
PROSITE profilePS5103221.456174231IPR001471AP2/ERF domain
SMARTSM003802.8E-36174237IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-20174232IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-30174232IPR001471AP2/ERF domain
PRINTSPR003679.2E-10175186IPR001471AP2/ERF domain
PRINTSPR003679.2E-10197213IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MSGQVRATSP SFPATCAMLV PRHDEHWKSP ITRGNDNGGH SGSFVRLLNL RRAFYIDIHC  60
VYRFSNLRGP GVSNPNVQIN PRNGRTSRCM SSSSLTINTV KDKHVATEPQ RRRKVRSRNH  120
GCTTVVETLA KWQELNSQVE SSKDGAKRLR KAPAKGSKKG CMKGKGGPDN GRCNYRGVRQ  180
RTWGKWVAEI REPNRGSRLW LGTFSSAEEA ALAYDQAARV MYGSCARLNL PDISSKESSV  240
TSTSTTHVTC QSQECSTSQQ YEVSSEWKDS KSSPLDKYGL SPVPSSQSPG IDAVSEAGVE  300
VRNGGRIADT DQRYGSEICS GVEAAKSDFP SKVEISAALP DSAVDLPVKS DTKECTLIPR  360
LVPKDEPQDA DGRNTFDLSQ TTLLRFRDEP QSELPSAAVS IALSNPEVQP ISIKAEQNES  420
AEPLDSFQDI QLQDLDEMFD PDELLKMMNG NENKGELSEA DTQMLSSLYY SSWPQEELTD  480
GDVLPSCDPS SSPTLQYLQF QSPDYRMLQN PVVEDEGEQL HLDDRNFKGL GQLQQFNLDS  540
FQQSEYQAVK QHVRFDDRQP LHPKVLDDGH FASFPYPYNN QGYQTEDTRT RQVVSPESML  600
TDDLQGMQDS RIFEDIFSSY N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-18174231260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1162310.0BT116231.1 Picea glauca clone GQ03714_D04 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.22e-31DRE-binding protein 2A