PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_167434g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 533aa    MW: 59881.5 Da    PI: 6.4028
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_167434g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.000641638123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y C++C+k+F +   L  H+r+H
  MA_167434g0010 16 YLCKICSKRFVSGRALGGHMRVH 38
                    56*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.8E-41038IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.7E-71638IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.4291639IPR007087Zinc finger, C2H2
SuperFamilySSF576671.01E-61638No hitNo description
SMARTSM003550.0231638IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801838IPR007087Zinc finger, C2H2
SuperFamilySSF576671.01E-6115142No hitNo description
SMARTSM0035527120142IPR015880Zinc finger, C2H2-like
PfamPF139120.0011122144IPR007087Zinc finger, C2H2
SuperFamilySSF576671.92E-5291322No hitNo description
PfamPF139121.7E-9293318IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.492294321IPR007087Zinc finger, C2H2
SMARTSM003550.033294316IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280296316IPR007087Zinc finger, C2H2
PfamPF139127.4E-13381406IPR007087Zinc finger, C2H2
PROSITE profilePS501578.995382404IPR007087Zinc finger, C2H2
SMARTSM003552.5382404IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280384404IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MEVFKKQEEG ERPLSYLCKI CSKRFVSGRA LGGHMRVHAT TSLSADTLTE TKFQKSKKPR  60
ASDHKSMEGK EKDAEELDNN GSNLMYTLRK NPKRSARFAD RDYSYLLGDG FDSKPIDSSI  120
NCDLWGKEFS SWKGLFGHMK CHSEIHQDIS EAHPEESQQH ETQDDEEEES ESDAEIEIDH  180
PSGKSNRFDK CMKGKRSKRL RYAIQLINPH EQFGSETSNE EEDMAMCLVM LASGVNTAKN  240
PQFQVVAEEP GSGDFKLPNT GSQFPKCMRK KPKYKKIDGD AGLYNDDEVK KGRYKCTTCN  300
KVFHSHQALG GHRASHNKVR GYFSQIEDET ESLEEDITDE ELISESDSFH KPRPKERTKD  360
SCVKARTIEP ASFSGRKTPR VHECSICHRV FHSGQALGGH KRCHWASAGA SDTVSTISSN  420
KDTPTQQQMP TRVELLDLNL PAPVDDDCDA GNLNNLGGNA VDFHGASYAQ THSPPNLQPW  480
LMDSYPKQGL LLYNNHTDLS EYDEADSKVG KEIGFGRGCV SDFPVRAQSW LQL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9RQJ11e-161A0A0C9RQJ1_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_25048_2114 transcribed RNA sequence
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP2521820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.12e-24C2H2-like zinc finger protein