PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_167434g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | C2H2 | ||||||||
Protein Properties | Length: 533aa MW: 59881.5 Da PI: 6.4028 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12 | 0.00064 | 16 | 38 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++C+k+F + L H+r+H MA_167434g0010 16 YLCKICSKRFVSGRALGGHMRVH 38 56*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 4.8E-4 | 10 | 38 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.7E-7 | 16 | 38 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.429 | 16 | 39 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.01E-6 | 16 | 38 | No hit | No description |
SMART | SM00355 | 0.023 | 16 | 38 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 18 | 38 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.01E-6 | 115 | 142 | No hit | No description |
SMART | SM00355 | 27 | 120 | 142 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 0.0011 | 122 | 144 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.92E-5 | 291 | 322 | No hit | No description |
Pfam | PF13912 | 1.7E-9 | 293 | 318 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.492 | 294 | 321 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.033 | 294 | 316 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 296 | 316 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.4E-13 | 381 | 406 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.995 | 382 | 404 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.5 | 382 | 404 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 384 | 404 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 533 aa Download sequence Send to blast |
MEVFKKQEEG ERPLSYLCKI CSKRFVSGRA LGGHMRVHAT TSLSADTLTE TKFQKSKKPR 60 ASDHKSMEGK EKDAEELDNN GSNLMYTLRK NPKRSARFAD RDYSYLLGDG FDSKPIDSSI 120 NCDLWGKEFS SWKGLFGHMK CHSEIHQDIS EAHPEESQQH ETQDDEEEES ESDAEIEIDH 180 PSGKSNRFDK CMKGKRSKRL RYAIQLINPH EQFGSETSNE EEDMAMCLVM LASGVNTAKN 240 PQFQVVAEEP GSGDFKLPNT GSQFPKCMRK KPKYKKIDGD AGLYNDDEVK KGRYKCTTCN 300 KVFHSHQALG GHRASHNKVR GYFSQIEDET ESLEEDITDE ELISESDSFH KPRPKERTKD 360 SCVKARTIEP ASFSGRKTPR VHECSICHRV FHSGQALGGH KRCHWASAGA SDTVSTISSN 420 KDTPTQQQMP TRVELLDLNL PAPVDDDCDA GNLNNLGGNA VDFHGASYAQ THSPPNLQPW 480 LMDSYPKQGL LLYNNHTDLS EYDEADSKVG KEIGFGRGCV SDFPVRAQSW LQL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0C9RQJ1 | 1e-161 | A0A0C9RQJ1_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_25048_2114 transcribed RNA sequence |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2521 | 8 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45120.1 | 2e-24 | C2H2-like zinc finger protein |