PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_16729g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB_related | ||||||||
Protein Properties | Length: 130aa MW: 14560.2 Da PI: 8.7238 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.1 | 4.7e-09 | 42 | 85 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT + + + +a + + ++ +W+ +a+++g g+t+ ++k ++ MA_16729g0010 42 NWTSQQNKVFENALAIYDKDtpdRWHNVASMVG-GKTPQEVKKHY 85 8********************************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.722 | 38 | 93 | IPR017884 | SANT domain |
SMART | SM00717 | 7.7E-8 | 39 | 91 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.8E-5 | 41 | 95 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.47E-7 | 42 | 89 | No hit | No description |
SuperFamily | SSF46689 | 1.12E-12 | 42 | 96 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.8E-6 | 42 | 85 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
MCGSERTLLV DSVRTFGRSV SSSPKNNMAG QSAASSSNTA TNWTSQQNKV FENALAIYDK 60 DTPDRWHNVA SMVGGKTPQE VKKHYEILLE DLDSIEAGQV PFPNYKSSGS NNRCNSVEEE 120 RRRFMRLKLQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-35 | 34 | 130 | 2 | 93 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT109933 | 0.0 | BT109933.1 Picea glauca clone GQ03213_O06 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021680636.1 | 9e-40 | protein RADIALIS-like 3 | ||||
Swissprot | Q58FS3 | 3e-35 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | D5ADC1 | 4e-41 | D5ADC1_PICSI; Uncharacterized protein | ||||
STRING | XP_010088924.1 | 1e-37 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP347 | 12 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 5e-33 | RAD-like 1 |
Publications ? help Back to Top | |||
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