PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_16704g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

TCP

Protein Properties

Length: 346aa MW: 37923.9 Da PI: 8.1682

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_16704g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	84.4	2.8e-26	46	235	4	131
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssa..sec.eaessss 80 +d+h + T+ g+Rd R+ ls+ +a f+ +qd+LGfd++s+++eWL+++a+ ai el++ + a s+c ++++ +s MA_16704g0010 46 SQDQHTMVLTSNGPRDQRMELSVRTAVMFYFVQDMLGFDQPSEAVEWLIEKAEDAIRELPQPasistshrsqyvdsniT---AvaSSCvQTGDLNS 138 67999*******************************************************88877766666664431...24456664444444 PP TCP 81 sasnsssg..............................................kaaksaakskksqksaasalnlakesrakarararertrekm 130 s+++++ + ++ + ++++++++ + + ke +akar++ r+rt+ k MA_16704g0010 139 SSQENTFSdsedrrgnrhdeilaartsigqklstakttesnsidsighgerreqRSVAMRSVASNRRTRETVNAVPPKEFKAKAREKCRQRTKPKD 234 444222224456677777888889888889999999999766666666666654222222222333333333455556677*********9987 PP TCP 131 r 131 + MA_16704g0010 235 K 235 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.2E-25	45	235	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	21.31	46	104	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MGEEAFNFSK EMAANIPGER RVHKGFRVRR SARDFDASGI SPCSGSQDQH TMVLTSNGPR 60 DQRMELSVRT AVMFYFVQDM LGFDQPSEAV EWLIEKAEDA IRELPQPASI STSHRSQYVD 120 SNITAVASSC VQTGDLNSSS QENTFSDSED RRGNRHDEIL AARTSIGQKL STAKTTESNS 180 IDSIGHGERR EQRSVAMRSV ASNRRTRETV NAVPPKEFKA KAREKCRQRT KPKDKSYSQQ 240 IGISGISQKS SVCPHCPTFC LQENTTPPPT MMNETTDANS SSNAFLHGLV LPDDSTLCNH 300 SRRCITSAPA EIQCSSHASV HYSAAKQGGS STQSTGTFSK SLSSNT

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MGEEAFNFSK EMAANIPGER RVHKGFRVRR SARDFDASGI SPCSGSQDQH TMVLTSNGPR  60
DQRMELSVRT AVMFYFVQDM LGFDQPSEAV EWLIEKAEDA IRELPQPASI STSHRSQYVD  120
SNITAVASSC VQTGDLNSSS QENTFSDSED RRGNRHDEIL AARTSIGQKL STAKTTESNS  180
IDSIGHGERR EQRSVAMRSV ASNRRTRETV NAVPPKEFKA KAREKCRQRT KPKDKSYSQQ  240
IGISGISQKS SVCPHCPTFC LQENTTPPPT MMNETTDANS SSNAFLHGLV LPDDSTLCNH  300
SRRCITSAPA EIQCSSHASV HYSAAKQGGS STQSTGTFSK SLSSNT

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP180	15	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18390.2	2e-23	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2