PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_16619g0020
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NAC
Protein Properties Length: 237aa    MW: 27039.5 Da    PI: 5.2132
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_16619g0020genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM78.12e-2477955128
            NAM  55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                    ++ew+fF++r ++++   r+nr t sg+Wk+tg+d+++ ++  + +glkktLvfykg+ap g+ktdW+m+eyrl
  MA_16619g0020   7 QEEWFFFVPRVHRKPC-PRPNRLTVSGFWKSTGSDRTIRNELLHCIGLKKTLVFYKGKAPGGKKTDWIMNEYRL 79 
                    679*******999985.8**********************99999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100532.741101IPR003441NAC domain
SuperFamilySSF1019419.29E-257101IPR003441NAC domain
PfamPF023651.7E-12979IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MTRGNYQEEW FFFVPRVHRK PCPRPNRLTV SGFWKSTGSD RTIRNELLHC IGLKKTLVFY  60
KGKAPGGKKT DWIMNEYRLP DFSSSTTEKK IDMVLCRIYR KAGTRKSMEE RAKPTDVEKE  120
DPVFSAGNEY EEKLSNSFSL NGSCELSNAV GETGVSSLHY QNQEGVCSSV LSETNDEDNL  180
FECLEPIMFC EENKDCEPPH LELPTFSMDC LLSHEAIPSP WADNINTWTP YALLSTP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-25710170165NO APICAL MERISTEM PROTEIN
1ut4_B5e-25710170165NO APICAL MERISTEM PROTEIN
1ut7_A5e-25710170165NO APICAL MERISTEM PROTEIN
1ut7_B5e-25710170165NO APICAL MERISTEM PROTEIN
3swm_A6e-25710173168NAC domain-containing protein 19
3swm_B6e-25710173168NAC domain-containing protein 19
3swm_C6e-25710173168NAC domain-containing protein 19
3swm_D6e-25710173168NAC domain-containing protein 19
3swp_A6e-25710173168NAC domain-containing protein 19
3swp_B6e-25710173168NAC domain-containing protein 19
3swp_C6e-25710173168NAC domain-containing protein 19
3swp_D6e-25710173168NAC domain-containing protein 19
4dul_A5e-25710170165NAC domain-containing protein 19
4dul_B5e-25710170165NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A075M5N52e-79A0A075M5N5_9SPER; NAC domain protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.15e-33NAC domain containing protein 36