PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_16619g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NAC

Protein Properties

Length: 288aa MW: 32928.6 Da PI: 7.3342

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_16619g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	143.6	1.1e-44	4	130	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 pGfrF Pt+eelv +yLkk+++g++ ++++ vi+++d+y+++P +Lp +++ ee++w+fF++rd+k+++ r+nr tksgyWkatg+d+++ ++ MA_16619g0010 4 PGFRFYPTEEELVGFYLKKRIQGSHpMNFDIVIPTLDLYRYDPCELPsLAHDVEERQWFFFVPRDHKNSS-GRPNRLTKSGYWKATGSDRAIRNEL 98 9********************995666666***********556667899******9875.6******************99 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 + +glkk+Lvfykg+ap g+ktdW+m+eyrl MA_16619g0010 99 LQCIGLKKILVFYKGKAPYGQKTDWIMNEYRL 130 999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	49.556	2	151	IPR003441	NAC domain
Pfam	PF02365	6.1E-25	4	130	IPR003441	NAC domain
SuperFamily	SSF101941	1.26E-46	4	151	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MDLPGFRFYP TEEELVGFYL KKRIQGSHPM NFDIVIPTLD LYRYDPCELP SLAHDVEERQ 60 WFFFVPRDHK NSSGRPNRLT KSGYWKATGS DRAIRNELLQ CIGLKKILVF YKGKAPYGQK 120 TDWIMNEYRL PDLRSSSVKV RDIVLCRIYR KAASQRSMEL QAKPDHVVKE ETAVSGDEYE 180 DTSYSTTLND GGQLSNPMTE IEVSSLYYQK RERVCSSDQS KTNNGDSLYE CLEPIMLSEE 240 TRVLKNPKAC KTALLELPNM SLNCPLSQPI ATPPALLSTP PPFQPSLI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-45	4	154	19	168	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-45	4	154	19	168	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-45	4	154	19	168	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-45	4	154	19	168	NO APICAL MERISTEM PROTEIN
3swm_A	5e-45	4	154	22	171	NAC domain-containing protein 19
3swm_B	5e-45	4	154	22	171	NAC domain-containing protein 19
3swm_C	5e-45	4	154	22	171	NAC domain-containing protein 19
3swm_D	5e-45	4	154	22	171	NAC domain-containing protein 19
3swp_A	5e-45	4	154	22	171	NAC domain-containing protein 19
3swp_B	5e-45	4	154	22	171	NAC domain-containing protein 19
3swp_C	5e-45	4	154	22	171	NAC domain-containing protein 19
3swp_D	5e-45	4	154	22	171	NAC domain-containing protein 19
4dul_A	5e-45	4	154	19	168	NAC domain-containing protein 19
4dul_B	5e-45	4	154	19	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT102042	0.0	BT102042.1 Picea glauca clone GQ0164_N20 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020093751.1	2e-61	NAC domain-containing protein 35
Swissprot	Q10S65	2e-55	NAC22_ORYSJ; NAC domain-containing protein 22
Swissprot	Q9ZVP8	2e-54	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A075M5N5	1e-134	A0A075M5N5_9SPER; NAC domain protein
STRING	XP_008813634.1	9e-61	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	5e-57	NAC domain containing protein 35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]