PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_16489g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 288aa    MW: 32262.4 Da    PI: 5.4416
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_16489g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.84.4e-09102145755
                    HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      Er+RR+ +++ +++Lr+++P+ +      K++K +i++ A+ Y+ +Lq
  MA_16489g0010 102 HTERKRRKILKETLFKLRSVVPNiS------KMDKQSIVQDAISYVLDLQ 145
                    57*********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.20E-994149No hitNo description
PROSITE profilePS5088813.86595144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-1498164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-8101150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-6102145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-12103160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
DMSNIGSVGL YENLSGQTSS YSEPNTVESQ TDQNPAISVC SEDLAMDHQN SKLWMDMDEN  60
SGQFEWDDNN AEIVGSNPAI KTYNTDGRVV QWQQRQTSKN LHTERKRRKI LKETLFKLRS  120
VVPNISKMDK QSIVQDAISY VLDLQKKVRE IEDEIHALSS SNRPDHNQAI TSETTKPNDN  180
CASIKSADMK KSSNKLIKQG KILEVEICNV GEGAIYHVRI EGKKEAGLLV KLARALETLP  240
LHIMNSNFCC FDEAIVSTLT LNGSSMKILG ADKLEDMIRQ TIDSIWLG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1019170.0BT101917.1 Picea glauca clone GQ0133_F10 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LRN61e-90B8LRN6_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5571678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.24e-24bHLH family protein