PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_164803g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 175aa MW: 19952.4 Da PI: 8.6242 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.2 | 1.2e-19 | 33 | 82 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+Wv+eIr+p++ +kr++lg+++t+++Aa+a++ a+++l+g MA_164803g0010 33 IYRGVRRRG-WGKWVSEIREPRK---KKRIWLGSYDTPQMAARAHDVAALCLKG 82 69****998.**********843...6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.0E-14 | 32 | 82 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.28E-32 | 32 | 92 | No hit | No description |
SMART | SM00380 | 3.3E-33 | 33 | 96 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.406 | 33 | 90 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.0E-31 | 33 | 91 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.96E-22 | 33 | 91 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.4E-9 | 34 | 45 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-9 | 56 | 72 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MEEKQFAPNS NNMQREKKKR ICTEAEGAGS YPIYRGVRRR GWGKWVSEIR EPRKKKRIWL 60 GSYDTPQMAA RAHDVAALCL KGKAAFLNFP DLVNLFPRPS SLDPCDIQSA AAKAARAFNT 120 ETSSLQSSSF QENVEYHNNC NTLTESLRET DGPDDTENSE LELRLDLWWP SKLVK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-18 | 34 | 95 | 15 | 77 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 37 | 56 | RRRGWGKWVSEIREPRKKKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcriptional activator. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT118267 | 1e-166 | BT118267.1 Picea glauca clone GQ04004_G10 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018478352.1 | 6e-44 | PREDICTED: ethylene-responsive transcription factor TINY-like | ||||
Swissprot | Q39127 | 2e-42 | TINY_ARATH; Ethylene-responsive transcription factor TINY | ||||
TrEMBL | A0A0D6R4W1 | 1e-48 | A0A0D6R4W1_ARACU; Uncharacterized protein | ||||
STRING | XP_010454922.1 | 5e-43 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25810.1 | 1e-33 | ERF family protein |
Publications ? help Back to Top | |||
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