PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_164675g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | WRKY | ||||||||
Protein Properties | Length: 357aa MW: 39999.6 Da PI: 8.9346 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 84.2 | 1.2e-26 | 162 | 220 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 dDg++WrKY qK++++++ prsYY+C+ a gCpvkk+v+r+aed ++v++tYe eH+h+ MA_164675g0010 162 DDGCQWRKYAQKMIESNPLPRSYYKCAWApGCPVKKQVQRCAEDLTIVITTYEIEHTHS 220 8**************************999****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.3E-30 | 148 | 220 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.84E-24 | 155 | 221 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.316 | 156 | 222 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-29 | 161 | 221 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.7E-24 | 162 | 219 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MLVAEINLIN KENLKLKSIL KLMNSKYNDL QMHNRSLIDQ RKGVDRNQIL NPDHQGNDVL 60 YARYSNGAVA SKDDQYWDCH ERGWEKEKKN GKFIDDQPLP SIKRTMNYLE SAQIDNRINS 120 CIDYSPRCHK KPPNKKHLSR GLAAVSKRVV STRTRSQPSM RDDGCQWRKY AQKMIESNPL 180 PRSYYKCAWA PGCPVKKQVQ RCAEDLTIVI TTYEIEHTHS LSPLAMAATH VGSSKQFIGE 240 EMIRENFVAD SQFVPCIARI STSSPFPTII LDLTENRPNT GLPLQPPHLA AGSFHHSIPF 300 PNNTGQDQLS IMQDYVASIK ADPNFAGAIA GCLLTLGVPV QGMPKSPPTT QCADGAN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-18 | 153 | 221 | 9 | 76 | Probable WRKY transcription factor 4 |
2lex_A | 1e-18 | 153 | 221 | 9 | 76 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT116121 | 1e-124 | BT116121.1 Picea glauca clone GQ03712_D11 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A482CVK9 | 1e-132 | A0A482CVK9_9SPER; WRKY164 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04450.1 | 7e-39 | WRKY family protein |