PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_16454g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | bHLH | ||||||||
Protein Properties | Length: 238aa MW: 26414.9 Da PI: 6.5287 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.6 | 1.7e-11 | 79 | 125 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RRdr+N++f eL ++l + + +K +Ka+iL A + +++L MA_16454g0010 79 KACREKMRRDRLNDRFMELSSVLEPG---RPPKTDKATILSDAARVMNQL 125 678**********************8...89**************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.76E-13 | 71 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.735 | 74 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.49E-8 | 78 | 130 | No hit | No description |
Pfam | PF00010 | 3.6E-9 | 79 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.1E-10 | 80 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.4E-13 | 81 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MSSPQSNKWL SYFDEPLLDE VGVGQPANPF FWCGPGINDQ PDVSGSVEID GSNKDIDEQE 60 KLCPRKRPRE ESSGGPGSKA CREKMRRDRL NDRFMELSSV LEPGRPPKTD KATILSDAAR 120 VMNQLRADAQ KLKESNDHLQ ETIKDLKAEK NELRDEKLRL KAEKERLEQQ VKAMTLPSGF 180 VPHPAAFHAA AAAFAAQSQA AANKTMPVPG YPGMAMWQWM PPAVVDTSQD HVLRPPVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF083857 | 0.0 | EF083857.1 Picea sitchensis clone WS0284_E21 unknown mRNA. | |||
GenBank | EF087900 | 0.0 | EF087900.1 Picea sitchensis clone WS02920_K20 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024390784.1 | 1e-102 | transcription factor ILR3-like | ||||
Refseq | XP_024390785.1 | 1e-102 | transcription factor ILR3-like | ||||
Swissprot | Q9FH37 | 6e-75 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A9NRC9 | 1e-175 | A9NRC9_PICSI; Uncharacterized protein | ||||
STRING | PP1S246_45V6.3 | 1e-101 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP755 | 17 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 1e-69 | bHLH family protein |