PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_161608g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

LBD

Protein Properties

Length: 309aa MW: 33359.2 Da PI: 8.184

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_161608g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	144.5	3.2e-45	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasn++kll++lp+++reda++sl+yeAear++dPvyG+vg i+ lq+q+++l+ ela MA_161608g0010 13 PCAACKFLRRKCTAECVFAPYFPPDQPHKFANVHKIFGASNITKLLNELPPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQMQHLQRELA 107 7********************************************************************************************** PP DUF260 96 llkee 100 ++++ MA_161608g0010 108 AAHAD 112 99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.626	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.8E-44	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MSRRDMASSS SSPCAACKFL RRKCTAECVF APYFPPDQPH KFANVHKIFG ASNITKLLNE 60 LPPHQREDAV NSLAYEAEAR MKDPVYGCVG AISILQRQMQ HLQRELAAAH ADLARYTGAT 120 SGAVSNPGGL LQAQQTNTLT QHMGMGMGIG MGMGMAGMGS MGMGMAAASP HHHHHHSMQV 180 SREQQVLEPT THLTREQLVE LARVGGGSYE AGLAALGITT NNVGVDAAEA TLIGAKVPAE 240 AAEAVWDRCL LRDEKHISFF FQLPRLTHLS LAAVQHTNIV ASGWNTGVSF SRLVYWKLLQ 300 NVILTFSSA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-61	10	126	8	124	LOB family transfactor Ramosa2.1
5ly0_B	2e-61	10	126	8	124	LOB family transfactor Ramosa2.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT107801	1e-124	BT107801.1 Picea glauca clone GQ03112_O05 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024530896.1	3e-76	protein ASYMMETRIC LEAVES 2
TrEMBL	A0A2R6WTX8	2e-85	A0A2R6WTX8_MARPO; Uncharacterized protein
STRING	PP1S170_93V6.1	6e-75	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	9e-63	LOB domain-containing protein 25