PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_161426g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family WRKY
Protein Properties Length: 360aa    MW: 40195.7 Da    PI: 8.4658
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_161426g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY919.6e-29162219359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     Dgy+WrKYGqK+ k+++ prsYY+C+ a +Cpvkk+v+r+aed ++ ++tYegeH+h+
  MA_161426g0010 162 DGYQWRKYGQKMLKSNPLPRSYYKCAWApSCPVKKQVQRCAEDHTIEITTYEGEHTHS 219
                     9*************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-30149219IPR003657WRKY domain
PROSITE profilePS5081126.268155221IPR003657WRKY domain
SuperFamilySSF1182905.89E-26156220IPR003657WRKY domain
SMARTSM007741.4E-32160220IPR003657WRKY domain
PfamPF031062.8E-24162218IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MEEMEGHKNK ITMLVADINL INKENLKLKS MLKRMISKYN DLQMHIRSLV DLQKGVEEAR  60
YSNGAVAPHY DQYWDFHERG LEKEKKNAKF MDDQQLPSKK RSKDYLESAQ IENLINSSID  120
DRPCCHKKPS TENHHALSRG LAAVPKRIVS TRTGSEPSMR GDGYQWRKYG QKMLKSNPLP  180
RSYYKCAWAP SCPVKKQVQR CAEDHTIEIT TYEGEHTHSS SPLVMASTHI GSSKQFIGEE  240
MIRENFVADS QFVPCIARIS TSSPFPTIIL DLTENRPNSG LHLQPPHLGA GSFHHSIPLP  300
NNTGQDQLSI MQDYVASIKA DPNFIATLAA AIAGSLLTLG APVQGMPKSP PTTQCADGAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-19152218974Probable WRKY transcription factor 4
2lex_A3e-19152218974Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1161211e-161BT116121.1 Picea glauca clone GQ03712_D11 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A482CVK91e-131A0A482CVK9_9SPER; WRKY164
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.17e-38WRKY family protein