PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_16118g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

WRKY

Protein Properties

Length: 899aa MW: 96992.4 Da PI: 6.8673

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_16118g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	101.2	6e-32	418	475	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers ++++ei+Y+g+Hnh+k MA_16118g0010 418 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSP-HGQITEIVYKGTHNHPK 475 7**************************************.9************85 PP
2	WRKY	106.5	1.3e-33	639	697	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+ MA_16118g0010 639 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 697 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.4E-28	414	476	IPR003657	WRKY domain
SuperFamily	SSF118290	5.23E-25	416	476	IPR003657	WRKY domain
SMART	SM00774	1.8E-35	417	475	IPR003657	WRKY domain
PROSITE profile	PS50811	23.365	418	476	IPR003657	WRKY domain
Pfam	PF03106	4.0E-25	418	474	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	5.3E-38	624	699	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-29	631	699	IPR003657	WRKY domain
PROSITE profile	PS50811	39.054	634	699	IPR003657	WRKY domain
SMART	SM00774	4.1E-40	639	698	IPR003657	WRKY domain
Pfam	PF03106	2.2E-26	640	697	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 899 aa Download sequence Send to blast
MGFQTPAKSM AGNEENNKMG FLDWGPLTSP STLIASMMAE DFGSRSFSQL LTGPQIETPQ 60 GQEQNLKPLS PAGFNGSSST SRSGKENDPF SVSGGFAPGS VPASGYGQVH KPPPRTARFK 120 CLPSVSSPGG VRSPYLTIPP GLSPTTLLDS PVLLSNSQAE QSPTTGSFPL PPFLHESSLS 180 PPPNCSSNGL KEKSYEDATS SSFIFKPHVK SGPSSCLSPL GGLATFGSSQ LQAVGGFQVQ 240 TESQTWAQFD SQMHGRSHSQ GQAQTYTQIQ TQVHAQSHTQ AQNQAEAQAF MQAENKAQSQ 300 AAAQVNNQAL DQGQAHVPAQ GQAQLWEQAV PNSTETKELV AYSLPESALS SNVVEEAKCV 360 PPLQVVPPLH VVPQDFPPEE TVPSEDQEQM QGSDAQLQLP EGDQKGSAPH TIVGRPSEDG 420 YNWRKYGQKQ VKGSEYPRSY YKCTHPNCQV KKKVERSPHG QITEIVYKGT HNHPKPQPSR 480 RSAVGSAHMI HEGAESTEGP GATIKVEGGS TWRNTEFGLL KDKDAAHCSK AWKNELLERS 540 SSASGVTDLS DPSSTAQVQS SSRLDSLGTP ELSSTLASDD DMEDGGTNDS KSLGDDGDEN 600 ESDSKRRKKE NNTVDIVAAS RAIREPRVVV QTTSEIDILD DGYRWRKYGQ KVVKGNPNPR 660 SYYKCTNAGC PVRKHVERAS HDPKAVITTY EGKHNHDVPA ARNSSHDNAA KGNGAAPLAM 720 QTNGPAPMNT IPRSVPQVQD IVSRPVPQVQ GIVSRFDRHL DPRNEYGKRA YFEKVVDGNL 780 RLQDKNAGSL DLKIGAGMGF GMFGLGNSHT DKRQIAEGHP PFPMQIHGTT NHGLPGIELS 840 GKPIVPIQPY FGQAKDNGMR FLRPKEEQND DSGFGNQLPF NPTNSTLYQQ IMGRLSMGP

Sequence ? help Back to Top

Protein Sequence Length: 899 aa Download sequence Send to blast

MGFQTPAKSM AGNEENNKMG FLDWGPLTSP STLIASMMAE DFGSRSFSQL LTGPQIETPQ  60
GQEQNLKPLS PAGFNGSSST SRSGKENDPF SVSGGFAPGS VPASGYGQVH KPPPRTARFK  120
CLPSVSSPGG VRSPYLTIPP GLSPTTLLDS PVLLSNSQAE QSPTTGSFPL PPFLHESSLS  180
PPPNCSSNGL KEKSYEDATS SSFIFKPHVK SGPSSCLSPL GGLATFGSSQ LQAVGGFQVQ  240
TESQTWAQFD SQMHGRSHSQ GQAQTYTQIQ TQVHAQSHTQ AQNQAEAQAF MQAENKAQSQ  300
AAAQVNNQAL DQGQAHVPAQ GQAQLWEQAV PNSTETKELV AYSLPESALS SNVVEEAKCV  360
PPLQVVPPLH VVPQDFPPEE TVPSEDQEQM QGSDAQLQLP EGDQKGSAPH TIVGRPSEDG  420
YNWRKYGQKQ VKGSEYPRSY YKCTHPNCQV KKKVERSPHG QITEIVYKGT HNHPKPQPSR  480
RSAVGSAHMI HEGAESTEGP GATIKVEGGS TWRNTEFGLL KDKDAAHCSK AWKNELLERS  540
SSASGVTDLS DPSSTAQVQS SSRLDSLGTP ELSSTLASDD DMEDGGTNDS KSLGDDGDEN  600
ESDSKRRKKE NNTVDIVAAS RAIREPRVVV QTTSEIDILD DGYRWRKYGQ KVVKGNPNPR  660
SYYKCTNAGC PVRKHVERAS HDPKAVITTY EGKHNHDVPA ARNSSHDNAA KGNGAAPLAM  720
QTNGPAPMNT IPRSVPQVQD IVSRPVPQVQ GIVSRFDRHL DPRNEYGKRA YFEKVVDGNL  780
RLQDKNAGSL DLKIGAGMGF GMFGLGNSHT DKRQIAEGHP PFPMQIHGTT NHGLPGIELS  840
GKPIVPIQPY FGQAKDNGMR FLRPKEEQND DSGFGNQLPF NPTNSTLYQQ IMGRLSMGP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	6e-38	418	700	8	78	Probable WRKY transcription factor 4
2lex_A	6e-38	418	700	8	78	Probable WRKY transcription factor 4
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT102978	0.0	BT102978.1 Picea glauca clone GQ0204_F05 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0C9RMD2	0.0	A0A0C9RMD2_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_11092_3323 transcribed RNA sequence

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G26640.1	1e-92	WRKY family protein