PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_159838g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 330aa    MW: 34847.1 Da    PI: 9.2927
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_159838g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.95.4e-11125151127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ykt+lC+++  +  C++Gd+C+FaHg+
  MA_159838g0010 125 YKTRLCSNYNTGEGCRFGDKCHFAHGE 151
                     9**********66************96 PP
2zf-CCCH38.12.6e-12297321126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC ++a+ GtC +GdrC+FaHg
  MA_159838g0010 297 FKTKLCENYAQ-GTCTFGDRCHFAHG 321
                     69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.55986IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.9445987IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-66086IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-76085IPR000571Zinc finger, CCCH-type
PfamPF146082.36784No hitNo description
Gene3DG3DSA:4.10.1000.105.4E-16120155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-9121155IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-7124151IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.192124152IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-8125151IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.2E-12203279IPR004088K Homology domain, type 1
SMARTSM003221.3E-9208278IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.102.0E-13209277IPR004088K Homology domain, type 1
PROSITE profilePS5008413.942209273IPR004088K Homology domain, type 1
PfamPF000139.1E-9211274IPR004088K Homology domain, type 1
CDDcd001051.83E-10213273No hitNo description
Gene3DG3DSA:4.10.1000.103.5E-16293326IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-9294326IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-8296322IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.699296323IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-9297321IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MDPFGHARKK ARSDAFLNEN GGRFNPQEST MFGDGNRFKS GGLTFGSLPE KESLPTGLGS  60
KSKACTKFFS TSGCPYGEGC HFQHHVQGGV NPVTQIPSLG SALGAASKKP VGVLPAEPTL  120
NASNYKTRLC SNYNTGEGCR FGDKCHFAHG EKELAKVNAP AHNLKDDWAT GPFGSRFPVG  180
GLDGKPVGRP GYREATPPGM AAAATFGASA TAKISVDAAL AGPIIGKGGI NSKHISRATG  240
AKLAIRDHES DTNLKNIELE GSFDQIKEAS AMVRQLIMHT SAVLPAAKQP SFTTNNFKTK  300
LCENYAQGTC TFGDRCHFAH GASELRDNSK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1183560.0BT118356.1 Picea glauca clone GQ04005_H21 mRNA sequence.
GenBankEF6772780.0EF677278.1 Picea sitchensis clone WS02764_K08 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083138.11e-108zinc finger CCCH domain-containing protein 44-like
SwissprotQ7F8R07e-96C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLB8LN830.0B8LN83_PICSI; Uncharacterized protein
STRINGXP_010265899.11e-105(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10261756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-46C3H family protein