PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_15962g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 618aa    MW: 67336.5 Da    PI: 5.5985
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_15962g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12423468454
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  MA_15962g0010 423 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 468
                    799***********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.8E-24181IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.39419468IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-18422491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.58E-15422473No hitNo description
Gene3DG3DSA:4.10.280.102.6E-18423489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-10423468IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-17425474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MMQSFVNECG VPGKAFSSAM PVWIIGSERL QGYNCDRARQ AQQFGIQTMV CIPTLNGVVE  60
LGSTDLIPQN WDLIQKARDS FTFTLPDTAL WEENHTQNDP DPALWLTEPP AEPKTETEKK  120
QQQIPNAETE ALHSFFPHEL GFSDLGFLNG EGENASQKLV VEECGQKEDK SSQGFTGSQV  180
SYQQNWQAQT TCKTEVVDIP VFQPGKRTNT NGITLSFENP YGAQGLVSWG DEKMKRSVRN  240
GNEDGGSGLC FSSEVTAVSA STSATAAAAA LPVNGAAGVS YQQNWQAQTT CKTEVVDIPV  300
FQPGKRTNTN GITLSFENPY GAQGLVSWGD EKMKRSVRNG NEDGGSGLCF SSEVTAVSAS  360
TSATAAAAAL PVNGAAGVRS SVESEHSDIE ASFKEAECSQ AIVERRPRKR GRKPANGREE  420
PLNHVEAERQ RREKLNQRFY ALRAVVPNVS KMDKASLLGD AISYINELRN KVQDSDSHKK  480
DLQAQLEALK KELVARESVA SGFSGSNFGL LKNPSAADPS NLDVKGFGLK NQCPNIELEV  540
RILGREAMVR VQCPKQNHPV ARLMVAFKEL ELEVHHASVS TVKELMIQTV ILNMTGIVYT  600
QEQLNAALLR KVADPGLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-34417496281Transcription factor MYC2
5gnj_B6e-34417496281Transcription factor MYC2
5gnj_E6e-34417496281Transcription factor MYC2
5gnj_F6e-34417496281Transcription factor MYC2
5gnj_G6e-34417496281Transcription factor MYC2
5gnj_I6e-34417496281Transcription factor MYC2
5gnj_M6e-34417496281Transcription factor MYC2
5gnj_N6e-34417496281Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1404412RRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in jasmonate (JA) signaling pathway during spikelet development. Binds to the G2 region G-box (5'-CACGTG-3') of the MADS1 promoter and thus directly regulates the expression of MADS1. Its function in MADS1 activation is abolished by TIFY3/JAZ1 which directly target MYC2 during spikelet development. {ECO:0000269|PubMed:24647160}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1191321e-148BT119132.1 Picea glauca clone GQ04101_L14 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026406636.12e-86transcription factor MYC2-like
SwissprotQ336P51e-82MYC2_ORYSJ; Transcription factor MYC2
TrEMBLA0A0K0K9P91e-115A0A0K0K9P9_TAXWM; BHLH transcription factor
STRINGMLOC_71611.29e-83(Hordeum vulgare)
STRINGSi039973m3e-82(Setaria italica)
STRINGSb01g028230.13e-82(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP37331224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.11e-74bHLH family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Cai Q, et al.
    Jasmonic acid regulates spikelet development in rice.
    Nat Commun, 2014. 5: p. 3476
    [PMID:24647160]