PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_158362g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

bHLH

Protein Properties

Length: 397aa MW: 44444.8 Da PI: 6.7834

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_158362g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.9	8.8e-09	229	275	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +Er RR++i +++ L++l+P + +k Ka ++ + ++Y++ Lq MA_158362g0010 229 HSLAERVRREKISERMKLLQDLVPGC----NKITGKAVMVDEIINYVQALQ 275 999*********************....899**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.01E-15	222	293	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.17E-9	222	279	No hit	No description
PROSITE profile	PS50888	15.021	224	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.5E-15	225	292	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.7E-6	229	275	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-8	230	280	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MALEGNRNYD FDGLTNYNKV SAISAPNYET SSASWHSAIS GCALNMNHQP SLQATAEGSF 60 RPDNSSYSLD ALLPFSVQVL DNVNRRTHLQ NVKLVSEHSL QRNLFSPIRV QQPEIEQKYN 120 ASGEECSSSE QSTGGRKRRI LPNDKARFQA STFTSSSEKN TENESKSKRP KIAEAKKEND 180 DSKSDAEQGT HTGRPEVNPR QSGQSVKPPE TPKDYIHVRA RRGQATDRHS LAERVRREKI 240 SERMKLLQDL VPGCNKITGK AVMVDEIINY VQALQCQVEF LSMKLEAVNP KLDFNMEGFL 300 VKDMLEPSGM SLASNTAMAY PQFHQPEWVG MQVGMPCEME EQCMGNARQV ALRRIMNENC 360 PLIEGCGDAK ISNVWDDELQ NVVRLGVGQN STSFFHI

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MALEGNRNYD FDGLTNYNKV SAISAPNYET SSASWHSAIS GCALNMNHQP SLQATAEGSF  60
RPDNSSYSLD ALLPFSVQVL DNVNRRTHLQ NVKLVSEHSL QRNLFSPIRV QQPEIEQKYN  120
ASGEECSSSE QSTGGRKRRI LPNDKARFQA STFTSSSEKN TENESKSKRP KIAEAKKEND  180
DSKSDAEQGT HTGRPEVNPR QSGQSVKPPE TPKDYIHVRA RRGQATDRHS LAERVRREKI  240
SERMKLLQDL VPGCNKITGK AVMVDEIINY VQALQCQVEF LSMKLEAVNP KLDFNMEGFL  300
VKDMLEPSGM SLASNTAMAY PQFHQPEWVG MQVGMPCEME EQCMGNARQV ALRRIMNENC  360
PLIEGCGDAK ISNVWDDELQ NVVRLGVGQN STSFFHI

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT118477	0.0	BT118477.1 Picea glauca clone GQ04006_M07 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008809650.1	1e-73	transcription factor bHLH78-like isoform X2
TrEMBL	D5AB87	0.0	D5AB87_PICSI; Uncharacterized protein
STRING	ERN10031	3e-72	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP58	16	313

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26260.3	6e-56	cryptochrome-interacting basic-helix-loop-helix 5