PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_152275g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | NF-YB | ||||||||
Protein Properties | Length: 131aa MW: 14914.7 Da PI: 4.3359 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 65.3 | 1.2e-20 | 3 | 73 | 15 | 85 |
NF-YB 15 rimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 +i+k++lP + ++++da++++ ec +efi +++se+++ c re+++ti+++ +l al lGf dy+e++ MA_152275g0010 3 KIIKEMLPPDVRVARDAQDLLVECCVEFINLISSESNEVCGREEKRTIAPEHVLRALEVLGFGDYIEEVYP 73 89*****************************************************************9864 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.22E-30 | 2 | 120 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 4.6E-33 | 3 | 122 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.4E-17 | 3 | 59 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MFKIIKEMLP PDVRVARDAQ DLLVECCVEF INLISSESNE VCGREEKRTI APEHVLRALE 60 VLGFGDYIEE VYPAYEQHRL ETLDSPKSGR WASGAEMTEE EALAEQQRMF VEARARMNNG 120 NANPPRQSDS D |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 8e-32 | 3 | 114 | 23 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF677004 | 0.0 | EF677004.1 Picea sitchensis clone WS02759_P15 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006841904.1 | 3e-84 | protein Dr1 homolog | ||||
Refseq | XP_011622414.1 | 3e-84 | protein Dr1 homolog | ||||
Refseq | XP_020521360.1 | 3e-84 | protein Dr1 homolog | ||||
Swissprot | P49592 | 1e-67 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | B8LMI4 | 1e-90 | B8LMI4_PICSI; Uncharacterized protein | ||||
STRING | ERN03579 | 1e-83 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP3449 | 17 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.4 | 8e-72 | nuclear factor Y, subunit B13 |
Publications ? help Back to Top | |||
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