PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_151462g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | NF-YB | ||||||||
Protein Properties | Length: 124aa MW: 14024.6 Da PI: 4.2351 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 58 | 2.4e-18 | 2 | 66 | 21 | 85 |
NF-YB 21 lPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 lP + ++++da++++ ec +efi +++se+++ c re+++ti+++ +l al lGf dy+e++ MA_151462g0010 2 LPPDVRVARDAQDLLVECCVEFINLISSESNEVCGREEKRTIAPEHVLRALEVLGFGDYIEEVYP 66 8999*********************************************************9864 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 5.9E-30 | 2 | 115 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 4.02E-27 | 3 | 113 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.3E-14 | 4 | 52 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MLPPDVRVAR DAQDLLVECC VEFINLISSE SNEVCGREEK RTIAPEHVLR ALEVLGFGDY 60 IEEVYPAYEQ HRLETLDSPK SGRWASGAEM TEEEALAEQQ RMFVEARARM NNGNANPPRQ 120 SDSD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 3e-30 | 4 | 107 | 30 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF677004 | 0.0 | EF677004.1 Picea sitchensis clone WS02759_P15 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006841904.1 | 8e-79 | protein Dr1 homolog | ||||
Refseq | XP_011622414.1 | 8e-79 | protein Dr1 homolog | ||||
Refseq | XP_020521360.1 | 8e-79 | protein Dr1 homolog | ||||
Swissprot | P49592 | 2e-63 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | B8LMI4 | 5e-85 | B8LMI4_PICSI; Uncharacterized protein | ||||
STRING | ERN03579 | 3e-78 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP3449 | 17 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.4 | 1e-67 | nuclear factor Y, subunit B13 |
Publications ? help Back to Top | |||
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