PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_15044g0020

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NAC

Protein Properties

Length: 149aa MW: 17637.3 Da PI: 9.5444

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_15044g0020	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.7	3.1e-55	3	130	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeelv +yLk kv+g k+el e+i+++diyk+ePwdLp k + +++ ewyfF++r++ky++g r+nrat++gyWkatgkd++v s MA_15044g0020 3 LPPGFRFHPTDEELVAYYLKGKVHGWKIEL-EIIPKLDIYKCEPWDLPeKsLLPGRDMEWYFFCSRNRKYPNGLRTNRATEAGYWKATGKDRKVSS 97 79**************************.99**********95334555888*********************************9 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +l+g+kktLvfy+gr+p+g++t+Wvmhey l MA_15044g0020 98 -HMRLIGMKKTLVFYRGRSPHGSRTHWVMHEYCL 130 .999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.71E-59	2	137	IPR003441	NAC domain
PROSITE profile	PS51005	54.957	3	149	IPR003441	NAC domain
Pfam	PF02365	1.5E-29	4	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MSLPPGFRFH PTDEELVAYY LKGKVHGWKI ELEIIPKLDI YKCEPWDLPE KSLLPGRDME 60 WYFFCSRNRK YPNGLRTNRA TEAGYWKATG KDRKVSSHMR LIGMKKTLVF YRGRSPHGSR 120 THWVMHEYCL DKNECEDSAS FQVSRTFVN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-50	1	130	13	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017429367.1	6e-79	PREDICTED: NAC domain-containing protein 86-like
Refseq	XP_017429368.1	6e-79	PREDICTED: NAC domain-containing protein 86-like
Refseq	XP_018676048.1	4e-79	PREDICTED: NAC domain-containing protein 86-like
Refseq	XP_022868651.1	6e-79	NAC domain-containing protein 86-like
Swissprot	Q9FFI5	4e-74	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A0L9UX30	1e-77	A0A0L9UX30_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3RL40	1e-77	A0A0S3RL40_PHAAN; Uncharacterized protein
TrEMBL	A0A444CIX8	2e-78	A0A444CIX8_ENSVE; Uncharacterized protein (Fragment)
TrEMBL	A0A453J6S8	1e-77	A0A453J6S8_AEGTS; Uncharacterized protein
STRING	Lus10007377	4e-79	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	7e-77	NAC domain containing protein 28

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]