PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_14452g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 432aa MW: 48467.8 Da PI: 4.4272 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.4 | 2.5e-16 | 47 | 94 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +l ++++ +G W++ +++ g++R++k+c++rw++yl MA_14452g0010 47 RGAWTAEEDSRLSEYIQSHGESGWRSLPKKAGLNRCGKSCRLRWLNYL 94 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.9 | 1.8e-16 | 100 | 145 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ +++E+el+++ +++lG++ W++Ia +++ gRt++++k++w+++l MA_14452g0010 100 RGNISPDEEELIIRMHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 145 7899******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.875 | 42 | 94 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.1E-27 | 45 | 141 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.4E-12 | 46 | 96 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 47 | 94 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-22 | 48 | 101 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.80E-9 | 49 | 94 | No hit | No description |
PROSITE profile | PS51294 | 26.455 | 95 | 149 | IPR017930 | Myb domain |
SMART | SM00717 | 2.6E-16 | 99 | 147 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.2E-15 | 100 | 145 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-25 | 102 | 149 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.46E-12 | 104 | 145 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence Send to blast |
MISEKYQKPA RGSDQPGYKK LGVDASKRIA CIMGRTPCCS KREELNRGAW TAEEDSRLSE 60 YIQSHGESGW RSLPKKAGLN RCGKSCRLRW LNYLRPDIKR GNISPDEEEL IIRMHRLLGN 120 RWSLIAGRLP GRTDNEIKNY WNTHLSKKLT MSSQNPKFPM QAPADPEQSA SSDSSEDDVV 180 RSAEYGVINH SGIRSPPAKI GGTSISARVP PPVASDEVVI MKSWKQLLED SLMNELDDSE 240 DNSSLMGIEL SNDMLESEAP LMEIQNNVSC SASDPNESVY SHGHLVADET SNQRTSESNV 300 LYSQDCNVLS LPPTDHTLDF RIQDFSLESL LQPSVYNLEE ICPVQSQING SDHVSCFALA 360 AEQSMTDIYN NTLEPDWLTP VDYENQSSQP DPMDVLGNFF LSDENWQEEV PTSLSKIQEE 420 EYRDILVDIS NN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-27 | 44 | 149 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF676598 | 0.0 | EF676598.1 Picea sitchensis clone WS02743_O08 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LLG1 | 0.0 | B8LLG1_PICSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16720.1 | 3e-62 | myb domain protein 7 |