PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_141733g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

C2H2

Protein Properties

Length: 303aa MW: 33668.1 Da PI: 8.3553

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_141733g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00066	239	261	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg +Fs+ +L+ H + H MA_141733g0010 239 ECPRCGARFSSVASLVDHVESfH 261 5*****************98877 PP
2	zf-C2H2	20.3	1.4e-06	275	297	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+Cg+ Fs++ +L++H + H MA_141733g0010 275 VCPKCGRGFSNPVSLVQHVEKdH 297 7*****************99888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1110.10	4.7E-11	95	151	IPR000058	Zinc finger, AN1-type
SuperFamily	SSF118310	2.75E-9	98	151	No hit	No description
PROSITE profile	PS51039	8.207	103	150	IPR000058	Zinc finger, AN1-type
Pfam	PF01428	1.7E-8	106	146	IPR000058	Zinc finger, AN1-type
PROSITE profile	PS50157	9.099	238	266	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.55	238	261	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	2.88E-6	239	293	No hit	No description
PROSITE pattern	PS00028	0	240	261	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.681	274	302	IPR007087	Zinc finger, C2H2
SMART	SM00355	3.3	274	297	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	276	297	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MTYEVMHPKR FLLDTTRKCW NQNLRKIRIW EGNAFPDEVF CLEHRTYSQH HCPNANEHDV 60 TVLVCPMCAK GVRLVPNEDP NITWESHVST DCDPTNYDRV KKKPRCPAPG CKEILTFANK 120 VKCRDCAQEI CLKHRFGLDH KCPGPKKVEG NFTFSGIFGK NPKEKSMANA RAYSSPSSST 180 SQSLRSGLFS AVSNLRASAE VGMTKLSSAT NDVFNRVKSS ALSTQQSQEG NMQPVLAEEC 240 PRCGARFSSV ASLVDHVESF HESGHKGGFQ ELPDVCPKCG RGFSNPVSLV QHVEKDHGGT 300 SIH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	98	104	RVKKKPR

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in environmental stress response. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00306	DAP	Transfer from AT2G41835	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, dehydration and salt stress. {ECO:0000269\|PubMed:17033811}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT123549	0.0	BT123549.1 Picea sitchensis clone WS04714_J09 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024922676.1	1e-101	zinc finger AN1 and C2H2 domain-containing stress-associated protein 11-like, partial
Swissprot	Q0D5B9	4e-89	SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBL	D5ABE6	0.0	D5ABE6_PICSI; Uncharacterized protein
STRING	evm.model.supercontig_92.40	1e-100	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1909	15	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41835.1	7e-79	C2H2 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]