PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_139448g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 374aa MW: 41856.2 Da PI: 6.7258 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.4 | 5.1e-16 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l++ ++++G g+W++ a+ g+ R++k+c++rw +yl MA_139448g0010 16 KGPWTFEEDLRLLRHIRLHGEGRWSALAKAAGLQRCGKSCRLRWVNYL 63 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.6 | 1.2e-17 | 69 | 113 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T+eE++ ++d+++++G++ W++Ia++m+ gRt++++k++w+ + MA_139448g0010 69 RGNITPEEEQVIIDLHARWGNR-WSLIAERMP-GRTDNEIKNYWRCH 113 7999******************.*********.***********977 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.3E-23 | 10 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.858 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.77E-30 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.4E-14 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.6E-15 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.07E-11 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 26.368 | 64 | 118 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-25 | 67 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.3E-17 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-15 | 69 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.09E-13 | 73 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MNPRWALSAE KGKLKKGPWT FEEDLRLLRH IRLHGEGRWS ALAKAAGLQR CGKSCRLRWV 60 NYLRPDLKRG NITPEEEQVI IDLHARWGNR WSLIAERMPG RTDNEIKNYW RCHLKKKLQY 120 TADNSNGSQY CNLPLSLQQE FKNKQTPTAP LEPHLQQVTA GNANGSQYCN LPLSLQQEFK 180 NKQTPTAPLE PHLQQVTAGN ASVIYENKHC SASAGVELEI PMLSSSTPQE VYRNGSVITG 240 NSDLEDTETD YIAQRGGNTL SALVTGSEPI QKEMVGSELV DALPSILYRF PSGIPIEDDA 300 ARILQVSSRA NLNPTGTADP AHYLYPQYGC ELEYSGLDLG SDIMLWNLCP SPAISQCELH 360 SPFPYTCDSN THHM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-27 | 14 | 118 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13480.1 | 1e-53 | myb domain protein 79 |