PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_13933g0010
Common NameDAL12
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MIKC_MADS
Protein Properties Length: 238aa    MW: 27338.3 Da    PI: 8.5509
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_13933g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.11.7e-261161151
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   k+ien +nrqvtfskR++g+ KKA+ELS+LC aeva+iifss+gk yeyss
  MA_13933g0010 11 KKIENLTNRQVTFSKRKAGLQKKAKELSILCSAEVALIIFSSSGKHYEYSS 61
                   68***********************************************96 PP
2K-box45.14.2e-161011622889
          K-box  28 ienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 
                    i  L+r +Rhl G dLesLs++eLq+Le+qLe   +++R+k+ + + eq+e + +  +e ++
  MA_13933g0010 101 IVGLRRVIRHLTGGDLESLSVNELQKLEDQLEIVTSRVRKKRFQRMQEQLEAMTQELEESKR 162
                    56799**********************************************99766555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.09363IPR002100Transcription factor, MADS-box
SMARTSM004328.3E-38362IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-31486IPR002100Transcription factor, MADS-box
CDDcd002654.05E-42481No hitNo description
PRINTSPR004041.9E-27525IPR002100Transcription factor, MADS-box
PfamPF003192.4E-231259IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-272540IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-274061IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.08887176IPR002487Transcription factor, K-box
PfamPF014861.6E-11102163IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MRMGRGKIEI KKIENLTNRQ VTFSKRKAGL QKKAKELSIL CSAEVALIIF SSSGKHYEYS  60
SPCSSVEQIV EKYMNVSGSK LGEDQINTLI DGCVVKGDIE IVGLRRVIRH LTGGDLESLS  120
VNELQKLEDQ LEIVTSRVRK KRFQRMQEQL EAMTQELEES KRRLRYNEGF TQKKNDLYMF  180
SDCRGSLGET VDDYPFCQDK NPIYVTPSAP VFCVQPGQPH LHETDYRYLD LKLGYNRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A1e-18390184MEF2 CHIMERA
6bz1_B1e-18390184MEF2 CHIMERA
6bz1_C1e-18390184MEF2 CHIMERA
6bz1_D1e-18390184MEF2 CHIMERA
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1585410.0AF158541.1 Picea abies clone DAL12-1 MADS-box transcription factor (DAL12) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ9SEE11e-174Q9SEE1_PICAB; MADS-box transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61120.15e-36AGAMOUS-like 13
Publications ? help Back to Top
  1. Sundstr
    MADS-box genes active in developing pollen cones of Norway spruce (Picea abies) are homologous to the B-class floral homeotic genes in angiosperms.
    Dev. Genet., 1999. 25(3): p. 253-66
    [PMID:10528266]