PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_13910g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HSF
Protein Properties Length: 225aa    MW: 25286.3 Da    PI: 9.8484
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_13910g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.54.3e-33181102103
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl k+y++++d+++++++sw ++ n+fvv+ ++e++ +vLp+yF h nf+SFvRQLn+YgF+kv + +          eF+++ F+kg+ +ll++i
  MA_13910g0010  18 FLVKTYRLVDDPSTDHIVSWGDHDNTFVVWRPKELSASVLPSYFNHANFSSFVRQLNTYGFRKVVRGR---------CEFANELFRKGQSHLLSHI 104
                    9*********************99****************************************9988.........67***************** PP

                    XXXXXX CS
   HSF_DNA-bind  98 krkkse 103
                    +r++s+
  MA_13910g0010 105 QRRNSS 110
                    ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.5E-5014107IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.8E-3216107IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.1E-3616107IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.4E-181841IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.9E-2918107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-185668IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-186981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGGGGSARDS GRLVAAPFLV KTYRLVDDPS TDHIVSWGDH DNTFVVWRPK ELSASVLPSY  60
FNHANFSSFV RQLNTYGFRK VVRGRCEFAN ELFRKGQSHL LSHIQRRNSS TISTTQGSQM  120
EYDKSLNHYS SATVQDSDVP AAVPSLSKEN EILRRNNLLL LSEITHLQNI RRRDNKAFSR  180
HNTLNPPSID MDRSKIDNTS PSSSMTAVTE EISMSPPKLF GVPLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-211811120124Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002298460.11e-53heat stress transcription factor B-4b
SwissprotQ9C6354e-51HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLH9WK882e-72H9WK88_PINTA; Uncharacterized protein (Fragment)
STRINGPOPTR_0001s28040.15e-53(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-48heat shock transcription factor B4