PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_138461g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NAC

Protein Properties

Length: 369aa MW: 42314.2 Da PI: 7.3177

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_138461g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.9	3.9e-53	12	141	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPt+eel+++yLkkkv+ +k++l +vi++vd++k+ePwdL++ k+ + ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++ MA_138461g0010 12 VPPGFRFHPTEEELLHYYLKKKVSYEKIDL-DVIRDVDLNKLEPWDLHErcKIGSaPQNEWYFFSHKDKKYPTGSRTNRATAAGFWKATGRDKAI 105 69**************************.9***********862333333556********************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 + + + +g++ktLvfykgrap+g+ktdW+mheyrle MA_138461g0010 106 RN-SYKRIGMRKTLVFYKGRAPHGQKTDWIMHEYRLE 141 9.8899***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.75E-59	8	162	IPR003441	NAC domain
PROSITE profile	PS51005	57.856	12	162	IPR003441	NAC domain
Pfam	PF02365	9.8E-28	13	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009834	Biological Process	plant-type secondary cell wall biogenesis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048829	Biological Process	root cap development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MTSLSVNGSS SVPPGFRFHP TEEELLHYYL KKKVSYEKID LDVIRDVDLN KLEPWDLHER 60 CKIGSAPQNE WYFFSHKDKK YPTGSRTNRA TAAGFWKATG RDKAIRNSYK RIGMRKTLVF 120 YKGRAPHGQK TDWIMHEYRL EDNDNSLHGH EDGWVVCRVF KKKNYLKGHD DNSDPGSSNL 180 DQENSAVLSE PKDCRGHGEV QYSQIQHHHH QQQLLKHELA AAGMQYSILE SHHHDQLMQM 240 ARHLESQKLM NTAACNPPSP VSSGIKRLFP ERGIEDGSKR IHYNHDLPTG NGNGSSHVEI 300 TTQEQGHLNE IREGQVQLND WSALDRLVAS HLNQVEESSK EIRYVDAMPS GDHISLPLRS 360 EIDLWNFGK

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MTSLSVNGSS SVPPGFRFHP TEEELLHYYL KKKVSYEKID LDVIRDVDLN KLEPWDLHER  60
CKIGSAPQNE WYFFSHKDKK YPTGSRTNRA TAAGFWKATG RDKAIRNSYK RIGMRKTLVF  120
YKGRAPHGQK TDWIMHEYRL EDNDNSLHGH EDGWVVCRVF KKKNYLKGHD DNSDPGSSNL  180
DQENSAVLSE PKDCRGHGEV QYSQIQHHHH QQQLLKHELA AAGMQYSILE SHHHDQLMQM  240
ARHLESQKLM NTAACNPPSP VSSGIKRLFP ERGIEDGSKR IHYNHDLPTG NGNGSSHVEI  300
TTQEQGHLNE IREGQVQLND WSALDRLVAS HLNQVEESSK EIRYVDAMPS GDHISLPLRS  360
EIDLWNFGK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-50	11	164	14	170	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:20197506}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00431	DAP	Transfer from AT4G10350	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT101915	0.0	BT101915.1 Picea glauca clone GQ0133_D18 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011621045.1	1e-118	protein BEARSKIN2
Swissprot	Q9SV87	1e-102	BRN2_ARATH; Protein BEARSKIN2
TrEMBL	A0A345GNY9	1e-133	A0A345GNY9_CUNLA; NAC transcription factor 1 protein
STRING	ERM99762	1e-118	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10350.1	1e-103	NAC domain containing protein 70

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]