PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_137934g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 363aa    MW: 40760.6 Da    PI: 4.5763
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_137934g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.6e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT +Ed++lv +++++G g+W++ ++  g+ R++k+c++rw +yl
   MA_137934g0010 14 KGSWTLDEDQILVSYINKHGHGNWRALPKQAGLLRCGKSCRLRWTNYL 61
                     799*****************************99************97 PP
2Myb_DNA-binding47.63.8e-1567109145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg++++eE++ +++++++ G++ W+tIa++++ gRt++++k+ w 
   MA_137934g0010  67 RGNFSPEEEDHIIKLHQLIGNR-WSTIASYLP-GRTDNEIKNVWS 109
                      89********************.*********.*********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-24564IPR009057Homeodomain-like
PROSITE profilePS5129416.007961IPR017930Myb domain
SuperFamilySSF466894.49E-3111108IPR009057Homeodomain-like
SMARTSM007171.2E-131363IPR001005SANT/Myb domain
PfamPF002491.8E-151461IPR001005SANT/Myb domain
CDDcd001675.27E-111661No hitNo description
PROSITE profilePS5129422.46462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2565116IPR009057Homeodomain-like
SMARTSM007171.1E-1166114IPR001005SANT/Myb domain
PfamPF002491.5E-1367109IPR001005SANT/Myb domain
CDDcd001674.71E-869108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MGRAPCCDKM GVKKGSWTLD EDQILVSYIN KHGHGNWRAL PKQAGLLRCG KSCRLRWTNY  60
LRPDLKRGNF SPEEEDHIIK LHQLIGNRWS TIASYLPGRT DNEIKNVWST RLKKRLSRMK  120
DKSVAVDAQP APSSSLDSST EEMAYHGSNP LSLQILCNSD ARAPSAWEIC DPIYVSPEFS  180
EDVISSSYKV CTSTRDYQST SSDSTLDVLH SDCIDSLELE IDHSSLSINT VDELECQPLS  240
RDPQIFIAND RNNFEDPAGL PAIARDDKAE MVTSIRPACD GEIIISDESL NSSINLQVDS  300
PMQQFYGAEI DWLIDHADNM SPAMDSNRFA INTNQLWSAD LQVGEGMDYW LNILKQVEPL  360
PLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in cold-regulation of CBF genes and in the development of freezing tolerance. May be part of a complex network of transcription factors controlling the expression of CBF genes and other genes in response to cold stress. Binds to the MYB recognition sequences in the promoters of CBF1, CBF2 and CBF3 genes (PubMed:17015446). Involved in drought and salt tolerance. May enhance expression levels of genes involved in abscisic acid (ABA) biosynthesis and signaling, as well as those encoding stress-protective proteins (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and drought stress (PubMed:19161942). Induced by salt stress (PubMed:19161942). {ECO:0000269|PubMed:19161942}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6785020.0EF678502.1 Picea sitchensis clone WS02925_J15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9LTC43e-66MYB15_ARATH; Transcription factor MYB15
TrEMBLB8LRH40.0B8LRH4_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.11e-68myb domain protein 15
Publications ? help Back to Top
  1. Schnaubelt D, et al.
    Low glutathione regulates gene expression and the redox potentials of the nucleus and cytosol in Arabidopsis thaliana.
    Plant Cell Environ., 2015. 38(2): p. 266-79
    [PMID:24329757]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ma X, et al.
    CYCLIN-DEPENDENT KINASE G2 regulates salinity stress response and salt mediated flowering in Arabidopsis thaliana.
    Plant Mol. Biol., 2015. 88(3): p. 287-99
    [PMID:25948280]
  4. Kim SH, et al.
    Phosphorylation of the transcriptional repressor MYB15 by mitogen-activated protein kinase 6 is required for freezing tolerance in Arabidopsis.
    Nucleic Acids Res., 2017. 45(11): p. 6613-6627
    [PMID:28510716]
  5. Chezem WR,Memon A,Li FS,Weng JK,Clay NK
    SG2-Type R2R3-MYB Transcription Factor MYB15 Controls Defense-Induced Lignification and Basal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(8): p. 1907-1926
    [PMID:28733420]
  6. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]