PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_137453g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 253aa MW: 28699.4 Da PI: 10.2378 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.6 | 1.1e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + +WT eEd++lv+++++ G g+W++ ++ g+ R++k+c++rw +yl MA_137453g0010 14 KVPWTREEDKILVNYIQKNGHGNWRALPKLAGLLRSGKSCRLRWTNYL 61 579*****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 51.3 | 2.7e-16 | 67 | 109 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg++T+eE++ ++++++ lG++ W++Ia+ ++ gRt++++k++w MA_137453g0010 67 RGSFTEEEEQSIIQLHAILGNK-WSAIASQLP-GRTDNEIKNFWS 109 89********************.*********.***********6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.997 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.46E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.60E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.6 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.5E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-15 | 67 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.97E-10 | 69 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MSEGPCCKKT GLKKVPWTRE EDKILVNYIQ KNGHGNWRAL PKLAGLLRSG KSCRLRWTNY 60 LSPDIKRGSF TEEEEQSIIQ LHAILGNKWS AIASQLPGRT DNEIKNFWSS RLKKRLLRMG 120 LDPSTHAPIA EANPTSPRQS EALALLRHKA QWENARLEAE ARLSRASLLV SSNSTTGYRT 180 NNSTEDMITM RNDNPPTDYF LKLWNSEAGK AFRKESSNRR CDYSRHVFDL NHPPDKVGDD 240 QVLSSAIPKT PQS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-28 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT108182 | 0.0 | BT108182.1 Picea glauca clone GQ03117_O07 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017980167.1 | 5e-89 | PREDICTED: transcription repressor MYB6 isoform X1 | ||||
Swissprot | Q9M2D9 | 5e-87 | MYB17_ARATH; Transcription factor MYB17 | ||||
TrEMBL | A0A222UAM7 | 1e-98 | A0A222UAM7_GINBI; R2R3MYB15 | ||||
STRING | EOX96013 | 2e-88 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61250.1 | 2e-76 | myb domain protein 17 |