PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_134453g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 261aa MW: 28865.5 Da PI: 6.5268 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.9 | 6e-19 | 58 | 107 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+Wv+eIr+p++ ++r++lg+f+ta++Aa+a++ a+ l+g MA_134453g0010 58 TYRGVRRRS-WGKWVSEIREPKK---KTRIWLGSFDTADMAARAYDVAAFHLKG 107 69****887.**********854...6**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.3E-35 | 58 | 122 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.0E-12 | 58 | 107 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-30 | 58 | 117 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.749 | 58 | 116 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.6E-20 | 58 | 117 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.5E-10 | 59 | 70 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.15E-31 | 59 | 118 | No hit | No description |
PRINTS | PR00367 | 1.5E-10 | 81 | 97 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MDKEASSLSE TLVTSSAETE ASSKSALTAT SGMKRIRTQD EAAPSPPQDR TLKLQYPTYR 60 GVRRRSWGKW VSEIREPKKK TRIWLGSFDT ADMAARAYDV AAFHLKGKKH ALLNFPELID 120 DIPPPISLSP CHIQAAAAKA AAAFYPKKQE RRRSPRKPPV SKELPSSSSS SHKLCTVFSS 180 VSDPASAEVS GKTDSSNSSS VCRPTERVGE CVAMEYDLFE DFNFFTNLAE ALLLPPPLFT 240 IPEIEVDEEY NLDEGFLWSD S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-18 | 50 | 117 | 6 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | D5ABJ6 | 2e-97 | D5ABJ6_PICSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16280.1 | 7e-20 | ERF family protein |