PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_133015g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 263aa    MW: 30239.9 Da    PI: 9.9267
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_133015g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.13.9e-07114136123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C+ Cgk+F ++s+Lk H + H
  MA_133015g0010 114 HDCSECGKRFATPSSLKDHRNEH 136
                     56******************998 PP
2zf-C2H213.10.00029142166123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     y C+  dC ++F++k +L rH+++H
  MA_133015g0010 142 YNCKfeDCAMCFKSKQLLCRHLKKH 166
                     88**********************9 PP
3zf-C2H214.10.00013170194123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     +kC    Cgk+F  ++ L +H++ H
  MA_133015g0010 170 HKCMfeGCGKRFAFRERLIVHQKIH 194
                     6888889****************99 PP
4zf-C2H218.36.4e-06201224223
                     EET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCp..dCgksFsrksnLkrHirtH 23 
                     +Cp   Cgk+F+   +L+ H rtH
  MA_133015g0010 201 VCPweGCGKRFKWTNSLQGHKRTH 224
                     79999******************9 PP
5zf-C2H219.33.1e-06230254123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     ++C+   Cg++F  k +L+rH+rtH
  MA_133015g0010 230 FQCTyqGCGRHFGYKVDLTRHLRTH 254
                     89**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.2E-8111133IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.37E-11112166No hitNo description
SMARTSM003550.0039114136IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015715.272114141IPR007087Zinc finger, C2H2
PROSITE patternPS000280116136IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-8134166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.162142166IPR007087Zinc finger, C2H2
SMARTSM003550.073142166IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280144166IPR007087Zinc finger, C2H2
PROSITE profilePS5015714.212170199IPR007087Zinc finger, C2H2
SMARTSM003550.0085170194IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.5E-9170192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280172194IPR007087Zinc finger, C2H2
SuperFamilySSF576671.34E-17181235No hitNo description
Gene3DG3DSA:3.30.160.601.6E-16193222IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015714.96200229IPR007087Zinc finger, C2H2
SMARTSM003554.0E-4200224IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280202224IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.2E-16223256IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.9E-9225256No hitNo description
PROSITE profilePS5015713.027230259IPR007087Zinc finger, C2H2
SMARTSM003554.5E-4230254IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280232254IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
HQKLMRIACD QHNGSVEQFI IATLNASEVA GMSGKKAVIK KPTLSKWKRT RFEQMKGSET  60
QELAMAFRLL AASTPGSGVT SEFLSIPWQE LTMSQIEKML EETKKMLFLN EKVHDCSECG  120
KRFATPSSLK DHRNEHSGDK PYNCKFEDCA MCFKSKQLLC RHLKKHECAH KCMFEGCGKR  180
FAFRERLIVH QKIHSNERPL VCPWEGCGKR FKWTNSLQGH KRTHTGEKPF QCTYQGCGRH  240
FGYKVDLTRH LRTHNGQPAR ASH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A6e-2910625714188Aart
2i13_B6e-2910625714188Aart
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1099230.0BT109923.1 Picea glauca clone GQ03213_N01 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002983078.21e-118zinc finger protein 26
TrEMBLA0A1Y1ISJ71e-112A0A1Y1ISJ7_KLENI; Uncharacterized protein
STRINGEFJ332489e-77(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1524234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.13e-26C2H2 family protein