PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_132680g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 323aa    MW: 35035.8 Da    PI: 9.6638
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_132680g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.92.4e-15136182354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+ErrRR+riNs +++Lr+llP+      +K +Ka+ L ++++++k+L
  MA_132680g0010 136 KSHSEAERRRRERINSHLATLRTLLPST-----TKTDKASLLAEVIDHVKDL 182
                     79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.971133182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-13136182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.29E-5136184No hitNo description
Gene3DG3DSA:4.10.280.101.6E-14136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-14137189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-13139188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.627221303IPR002912ACT domain
SuperFamilySSF550212.38E-5223293No hitNo description
Gene3DG3DSA:3.30.70.2601.6E-6223294No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MRGFRDQMKV SSSEPSRAPR AAMLSETRSH GLKSEQIFSL PNDVYGLPRV PDFQGLKFPY  60
SYSGGRINTN NSSSNSLGMS AMCERMGLYM HLNGVGGAGG GGSRLVLDGV RGELVNAAKM  120
MTPKELMEAK AVAASKSHSE AERRRRERIN SHLATLRTLL PSTTKTDKAS LLAEVIDHVK  180
DLKRRASEIA KGNPVPTDVD ELRVEEADGD GDNSKGRLVI KASLCCDDRP DLLADLNRTL  240
HSLRLRAVKA EISTLGGRMK NVFIITSTEG VPEKDQDSPS VNCVQEALRA VMERAASNEL  300
SSGNLASNKR QRILPMDATS SAI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141146ERRRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002978655.22e-77transcription factor bHLH30
SwissprotQ9S7Y12e-59BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A0D6R7H81e-153A0A0D6R7H8_ARACU; Uncharacterized protein
STRINGEFJ142351e-69(Selaginella moellendorffii)
STRINGEFJ201021e-69(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.13e-53bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]