PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_129382g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 436aa MW: 48634.7 Da PI: 5.2779 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60 | 5.3e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd+llv++++++G g W+t +++ g+ R++k+c++rw +yl MA_129382g0010 14 RGPWTPEEDDLLVKYIQKHGEGGWRTLPKKAGLLRCGKSCRLRWMNYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 48.7 | 1.8e-15 | 72 | 112 | 6 | 48 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++lG++ W++Ia +m+ gRt++++k++w+++l MA_129382g0010 72 PDEEDLILRLHRLLGNR-WSLIAGRMP-GRTDNEIKNYWNTHL 112 89***************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.4E-23 | 5 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.858 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.9E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.9E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.04E-12 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.187 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-24 | 64 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.9E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.5E-14 | 72 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.77E-12 | 72 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0048354 | Biological Process | mucilage biosynthetic process involved in seed coat development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 436 aa Download sequence Send to blast |
MGRTPCCSKM GLNRGPWTPE EDDLLVKYIQ KHGEGGWRTL PKKAGLLRCG KSCRLRWMNY 60 LRPDVKRGQI LPDEEDLILR LHRLLGNRWS LIAGRMPGRT DNEIKNYWNT HLSKKLISEG 120 IDPRTHKPLA ESELEQLRND KSQGVDNVNS EDTNDPTSDT QQIQLEETET AMSDNIEACK 180 VIDNICHSPE LSKNVNDHPD TSAIDSLHTA ATSSSTAKAT QSTYIGSEGT YSSAVSDLGK 240 GGKLPQQSIN GAVHINQPLQ LPYCYATQEL SLEGHDWSPY LRTNTLTSSF FMAPSSGLDS 300 AQHFSDQGYQ TTARNALRGG HQYESFSTNP MQHRAVTEEI HQESYKENDG ANSCTLQANI 360 NPLGATTEDC NSDIFSYFLE SFMTEDQLLD EANYKHATPA SASVSQHMQQ LSQAQAPNHE 420 YDMWSVMSPT SQYPSN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 5e-26 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 5e-26 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT111093 | 0.0 | BT111093.1 Picea glauca clone GQ03232_J02 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A222UB26 | 1e-126 | A0A222UB26_GINBI; R2R3MYB21 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 1e-76 | myb domain protein 5 |