PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_128g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HD-ZIP
Protein Properties Length: 334aa    MW: 37671.5 Da    PI: 8.2924
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_128g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.5e-1876129356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k++++t eq+++Le+ Fe+ ++++ e++  LAk lgL+ rq+ vWFqNrRa+ k
  MA_128g0010  76 KKRRLTMEQVKTLEKSFEQGNKLDLERKMLLAKALGLQPRQIAVWFQNRRARSK 129
                  45689***********************************************99 PP
2HD-ZIP_I/II108.74.1e-3575167193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekkrrl+ eqvk+LE+sFe+ +kL+ erK+ la++Lglqprq+avWFqnrRAR ktkqlE+d++ L ++y  lk++ + L +e+++ ++++++
  MA_128g0010  75 EKKRRLTMEQVKTLEKSFEQGNKLDLERKMLLAKALGLQPRQIAVWFQNRRARSKTKQLERDFDILNQEYRVLKSKYNILLEENDQFKAKVQR 167
                  69***********************************************************************************99999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.84E-1969133IPR009057Homeodomain-like
SMARTSM003891.5E-1874135IPR001356Homeobox domain
PROSITE profilePS5007116.42275131IPR001356Homeobox domain
CDDcd000861.58E-1676132No hitNo description
PfamPF000461.4E-1576129IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-1877138IPR009057Homeodomain-like
PROSITE patternPS000270106129IPR017970Homeobox, conserved site
PfamPF021832.8E-10131172IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MSSNNSMTTK GHSAKAMSSS TSVGLQVAGS IRLYECENTR KRSMGFSSNS GALDLSEHDT  60
WEEEDGSDEC LHFGEKKRRL TMEQVKTLEK SFEQGNKLDL ERKMLLAKAL GLQPRQIAVW  120
FQNRRARSKT KQLERDFDIL NQEYRVLKSK YNILLEENDQ FKAKVQRLNR KLEDIHDNSK  180
AQGFNIESHQ KPANSVLQPT NSPTELSVKM ETPIKCSDPL RHIYPTRSKE GERYSIISEA  240
ASPVFNIHST RTVESPASPV SLITAANNSS PIHLEGYAVR EQVAGGGLKA HPPGHVWHCQ  300
PKVQVDQSRV NQAEDICCNL FCSLQPQGTM MLWE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123131RRARSKTKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NVG41e-107A9NVG4_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.12e-39HD-ZIP family protein