PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_128244g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 401aa MW: 44976.1 Da PI: 7.1115 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.7 | 1e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++lv+++++ G g+W++ ++ g+ R++k+c++rw +yl MA_128244g0010 14 KGPWTSEEDKILVNYIQENGHGSWRALPKLAGLLRCGKSCRLRWTNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 49.4 | 1.1e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+ ++++++ lG++ W+ Ia+ + gRt++++k++w+++l MA_128244g0010 67 RGSFTQEEERTIIQLHAILGNR-WSVIASQLL-GRTDNEIKNFWNTHL 112 89********************.********9.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.616 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.75E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.6E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.68E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.556 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.51E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MGRAPCCEKT GLKKGPWTSE EDKILVNYIQ ENGHGSWRAL PKLAGLLRCG KSCRLRWTNY 60 LKPDIKRGSF TQEEERTIIQ LHAILGNRWS VIASQLLGRT DNEIKNFWNT HLKKRLLRMG 120 IDPSTHAPRT DANPSSPQAF KALNLTRHKA QWENARLEAE VRLSRESLFM SSNSAAGYRT 180 NNTVELITMP DDNAPTDYFL KIWSSEAGKA FRKESSCRII NKSCNNSCHV FDLNHQNGGQ 240 DDQLLSSDTP KTPISSSLVS SLYCVSTQQC CYRSLNPDDT DKDNDSQHCN SASAEWIGDS 300 SVKTPDVLSC FADMTMGQTE RKVHKDSSSS EELGPAHVHC TGFSDLVQDF PDNNNSIGCM 360 IPELSTSFRQ QSTWPWSELN LEDSKDHWNN VSVTTRASAH G |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-27 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027334035.1 | 2e-94 | transcription factor MYB41-like | ||||
Swissprot | Q9M2D9 | 1e-91 | MYB17_ARATH; Transcription factor MYB17 | ||||
TrEMBL | A0A222UAM7 | 1e-128 | A0A222UAM7_GINBI; R2R3MYB15 | ||||
STRING | EOX96013 | 4e-93 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61250.1 | 8e-94 | myb domain protein 17 |