PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_12808g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

HSF

Protein Properties

Length: 477aa MW: 52768 Da PI: 4.3389

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_12808g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	114.9	5e-36	16	107	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 Fl+k+y++++d+ +++++sws+ +nsf+v+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++i MA_12808g0010 16 FLTKTYDMVDDPVTDSIVSWSSGNNSFIVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKNI 102 9**************************************************************999.........*************** PP XXXXX CS HSF_DNA-bind 98 krkks 102 r+k MA_12808g0010 103 YRRKP 107 986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	3.5E-40	6	100	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.07E-35	11	105	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	2.7E-63	12	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.4E-20	16	39	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.8E-31	16	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.4E-20	54	66	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	55	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.4E-20	67	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MDGSQTSSTN NAPPPFLTKT YDMVDDPVTD SIVSWSSGNN SFIVWNPPEF ARDLLPKYFK 60 HNNFSSFVRQ LNTYGFRKVD PDRWEFANEG FLRGQKHLLK NIYRRKPTHS HTQPQQQQGQ 120 SSSVGACVET VSQRLQGMEQ RQQQMMSFLA KAMQNPGFLA QLVQQNENNM RIAATNKKRR 180 LPKQEENSQD GQHGPPDGQI VKYQPALSDA TKAFFMQIFN TETSNKLEPS PNGLDNFSDV 240 GRSSSEAIDN GNGSSMGRQS GVTLTEMQGT SGFSDACVTS EISDIQVSST LSEMHCSAEL 300 PEIVASSGFP EMVVSSGLAD MHSFSNLAES IVTGTNLHTS QFELPELQST VTVNHNGSLP 360 SEDYMQPKIL RQDANSEPIA MEMGLAIDGD RFSSEGDGDI LLDGEDLMPE INDVFWEQFL 420 AESATSGGTE EAESAVQESF TKDQDEKSSE NGNWWNKKQN MDNLTEQMGQ LASESNP

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MDGSQTSSTN NAPPPFLTKT YDMVDDPVTD SIVSWSSGNN SFIVWNPPEF ARDLLPKYFK  60
HNNFSSFVRQ LNTYGFRKVD PDRWEFANEG FLRGQKHLLK NIYRRKPTHS HTQPQQQQGQ  120
SSSVGACVET VSQRLQGMEQ RQQQMMSFLA KAMQNPGFLA QLVQQNENNM RIAATNKKRR  180
LPKQEENSQD GQHGPPDGQI VKYQPALSDA TKAFFMQIFN TETSNKLEPS PNGLDNFSDV  240
GRSSSEAIDN GNGSSMGRQS GVTLTEMQGT SGFSDACVTS EISDIQVSST LSEMHCSAEL  300
PEIVASSGFP EMVVSSGLAD MHSFSNLAES IVTGTNLHTS QFELPELQST VTVNHNGSLP  360
SEDYMQPKIL RQDANSEPIA MEMGLAIDGD RFSSEGDGDI LLDGEDLMPE INDVFWEQFL  420
AESATSGGTE EAESAVQESF TKDQDEKSSE NGNWWNKKQN MDNLTEQMGQ LASESNP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	3e-27	14	105	18	120	Heat shock factor protein 1
5d5u_B	4e-27	14	105	27	129	Heat shock factor protein 1
5d5v_B	4e-27	14	105	27	129	Heat shock factor protein 1
5d5v_D	4e-27	14	105	27	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT113175	0.0	BT113175.1 Picea glauca clone GQ03326_L15 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006854048.2	1e-164	heat stress transcription factor A-1 isoform X1
Swissprot	Q84T61	1e-126	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	U5CZX6	1e-163	U5CZX6_AMBTC; Uncharacterized protein
STRING	ERN15515	1e-164	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP96	17	233

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16820.2	9e-82	heat shock factor 3

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]