PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_127139g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | LBD | ||||||||
Protein Properties | Length: 151aa MW: 16656.2 Da PI: 8.4955 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 144.9 | 2.4e-45 | 14 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+CakdC++apyfp+++p+kfa vh++FGasnv k+l++lpee+r da+ss+vyeA+ar+rdP+yG+vg i++lqqq++ lk++la MA_127139g0010 14 PCAACKLLRRRCAKDCIFAPYFPSDDPHKFASVHRVFGASNVNKMLQDLPEEQRGDAVSSMVYEANARVRDPIYGCVGAISSLQQQVAILKSQLA 108 7********************************************************************************************** PP DUF260 96 llkee 100 l+++e MA_127139g0010 109 LAQAE 113 *9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.342 | 13 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.9E-44 | 14 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MRETISKSSN GMSPCAACKL LRRRCAKDCI FAPYFPSDDP HKFASVHRVF GASNVNKMLQ 60 DLPEEQRGDA VSSMVYEANA RVRDPIYGCV GAISSLQQQV AILKSQLALA QAEIVHLKMR 120 QSQTSLSALF TNTNSKIMMM DEGSSPTHML D |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-46 | 13 | 115 | 10 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-46 | 13 | 115 | 10 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT107440 | 0.0 | BT107440.1 Picea glauca clone GQ03107_I11 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004294159.1 | 1e-72 | PREDICTED: LOB domain-containing protein 4 | ||||
Swissprot | Q9SHE9 | 5e-61 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A2P6Q8S7 | 1e-70 | A0A2P6Q8S7_ROSCH; Putative transcription factor AS2-LOB family | ||||
STRING | XP_004294159.1 | 4e-72 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 2e-63 | LOB domain-containing protein 4 |