PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_126761g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family LBD
Protein Properties Length: 282aa    MW: 30401.9 Da    PI: 7.0317
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_126761g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601261.8e-39611621101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC ++C++apyf ++q +++fa+vhk+FGasnv+kll ++p+++r++a+ +++yeA+ar++dPvyG+v++i++lqqq++ l++el
  MA_126761g0010  61 PCGACKFLRRKCISGCIFAPYFGSDQgAARFAAVHKVFGASNVSKLLLHIPQNRRHEAVVTICYEAQARLSDPVYGCVSTIFALQQQVDALRTEL 155
                     7***********************9989******************************************************************* PP

          DUF260  95 allkeel 101
                     + ++++l
  MA_126761g0010 156 SIVQAQL 162
                     **99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.05560162IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-3861159IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MLNASSSNGN NSNNGNHSNN GVDGDSNCEQ RIPQREVVEI VGGNSRRNGR SREEGASSGA  60
PCGACKFLRR KCISGCIFAP YFGSDQGAAR FAAVHKVFGA SNVSKLLLHI PQNRRHEAVV  120
TICYEAQARL SDPVYGCVST IFALQQQVDA LRTELSIVQA QLMNSRLAAA SAMQQQQHMG  180
MLQQAGVSVF ASNPSGSMSM SLPSSSLSIG PYGSSGMKDE TQSDPCAFHG MHYEVELPPT  240
IDNMSTTRPY EHLQMMTPSS HEDQSDDPVG LQGFAHSFLQ RK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-37581648113LOB family transfactor Ramosa2.1
5ly0_B3e-37581648113LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7110680.0KJ711068.1 Pinus tabuliformis clone PtLBD2 LBD2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K0M7251e-157A0A0K0M725_PINTB; LBD2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP40515100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.13e-64LOB domain-containing protein 20