PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_126273g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

WRKY

Protein Properties

Length: 471aa MW: 52766.8 Da PI: 6.9715

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_126273g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.8	4.5e-33	278	335	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt +C vkk+vers+edp+vv++tYeg+H+h+ MA_126273g0010 278 EDGYRWRKYGQKAVKNSPFPRSYYRCTNGKCFVKKRVERSSEDPSVVITTYEGQHTHH 335 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.3E-34	262	337	IPR003657	WRKY domain
SuperFamily	SSF118290	5.75E-29	269	337	IPR003657	WRKY domain
PROSITE profile	PS50811	31.135	272	337	IPR003657	WRKY domain
SMART	SM00774	5.3E-39	277	336	IPR003657	WRKY domain
Pfam	PF03106	3.7E-26	278	335	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence Send to blast
MAAPHEQPQP IPKSESSEPE SDSSDAWRLS EQQALFLPSY PTQEQKQTHS GFPPPSWITT 60 TNQLPCDTGA VSRSQDRNLY QTFTTPRAGG FVFNPSTEMS WNTDTQHHRP AQVLSRSSAL 120 MDIDSGLVDF PLISFQEYLQ REEEFPDFGH VVRPLSQIPE DHQTRHEAPE EAADFPPSGT 180 TAATEETRAG GRSGENSMVP STPNSSISSS STEGHEESSA GIRLGPSKTE PTSEDINTES 240 KPTEPETKKQ SRPRKKGQKR NREPRFAFMT KSDIDHLEDG YRWRKYGQKA VKNSPFPRSY 300 YRCTNGKCFV KKRVERSSED PSVVITTYEG QHTHHSPALL RGSSSGSSDQ LNHFAAVDHH 360 RATSPFNSAQ SPNFNFPNLR MAVQVPPRTN YYGMGSLQAQ TQAAHDPIHR GSSTLHHQQQ 420 IIRSIQQQQQ QHHDQSQQQQ HQLIHSHQMQ APTVDQGLLG DIVPPGMRKN P

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence Send to blast

MAAPHEQPQP IPKSESSEPE SDSSDAWRLS EQQALFLPSY PTQEQKQTHS GFPPPSWITT  60
TNQLPCDTGA VSRSQDRNLY QTFTTPRAGG FVFNPSTEMS WNTDTQHHRP AQVLSRSSAL  120
MDIDSGLVDF PLISFQEYLQ REEEFPDFGH VVRPLSQIPE DHQTRHEAPE EAADFPPSGT  180
TAATEETRAG GRSGENSMVP STPNSSISSS STEGHEESSA GIRLGPSKTE PTSEDINTES  240
KPTEPETKKQ SRPRKKGQKR NREPRFAFMT KSDIDHLEDG YRWRKYGQKA VKNSPFPRSY  300
YRCTNGKCFV KKRVERSSED PSVVITTYEG QHTHHSPALL RGSSSGSSDQ LNHFAAVDHH  360
RATSPFNSAQ SPNFNFPNLR MAVQVPPRTN YYGMGSLQAQ TQAAHDPIHR GSSTLHHQQQ  420
IIRSIQQQQQ QHHDQSQQQQ HQLIHSHQMQ APTVDQGLLG DIVPPGMRKN P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-23	265	337	2	74	WRKY transcription factor 1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ099038	1e-119	FJ099038.2 Pinus taeda isolate 2267 anonymous locus 2_6086_01 genomic sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69310.2	1e-47	WRKY DNA-binding protein 57