PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_126263g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 355aa    MW: 38728 Da    PI: 4.5458
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_126263g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.7e-13162204855
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ErrRR ++N+++ +Lr+l+Pk      +K++Ka+i+  A+ YI++Lq
  MA_126263g0010 162 LERRRRGQLNERLYTLRSLVPKI-----TKMDKASIVGDAISYIQDLQ 204
                     7*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.031154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-17160221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-17160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-17161221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.23E-14161208No hitNo description
PfamPF000108.3E-11162204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MEAAAAAAAH AGDHNGLLFC TDLMPGNSGA GSLIPICPPS SSSHAVGLQG WNFANSDSLW  60
ASHDLPVKPD QSFQPSLLHE ATELLTRNDS ENFTQDHPSF HSFGGLDIPC ESNLYGGSIP  120
QGIVDKKEPN WGYSSDEFDD LKEEDEKGSP DGRSSQPKTL LLERRRRGQL NERLYTLRSL  180
VPKITKMDKA SIVGDAISYI QDLQREVKDI QAEIEGLRSN VSLHNDSTPL DREDSGDSDL  240
DNEMQLYEEG NNDSPAPNEP PTLPTLDVNV NVSKVTESTF HIRICCEKNP GVLVNLMLAL  300
ESIQLDFHNA NLTSLDGQLI KTATVKIKKP HGPVEEEALR GAILGAASKY GFRTT
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP27531332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.31e-27bHLH family protein