PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_126261g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

bHLH

Protein Properties

Length: 362aa MW: 42185.6 Da PI: 6.3576

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_126261g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.6	9.6e-08	182	226	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h +Er+RR ++++ f+ L +llP++ K +K ++L +Y+++L MA_126261g0010 182 HMLAERNRRIKLKQHFSLLHSLLPNN-----SKRDKYSVLSDIRKYMSEL 226 7789*******************8.....699*****999999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.487	177	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.14E-13	180	246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.59E-7	181	230	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.5E-11	181	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-5	182	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.9E-8	183	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MDSKYTNPIM EIKAASVSEG DFNGIPWDYT TTSSSGMMIQ ANGQNAGNRN MNADSMCIID 60 DAYFEPPLYM STTETSWYSS SSEDMERFYQ LDHCNIYHPQ SINAADNSMS MPQSTLTLYR 120 QSAFVSYLRP AHSLCVNTGR QDLLKRSFNF LREIYEKRRE AANIPEAHEF DVSLQNKAAF 180 HHMLAERNRR IKLKQHFSLL HSLLPNNSKR DKYSVLSDIR KYMSELKRQV DELEQRNRAL 240 KESLRRNISN KERCSSLDLR HDENLTKIVY SSDEVVLRQS ENIPNQLDIR INVQIDPLSS 300 PNNLVIFLLE RLRELQLEVV SVEYSIQTFK FQAHLLIKQI EGEEWESSKW ENLAEVLRCT 360 FI

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MDSKYTNPIM EIKAASVSEG DFNGIPWDYT TTSSSGMMIQ ANGQNAGNRN MNADSMCIID  60
DAYFEPPLYM STTETSWYSS SSEDMERFYQ LDHCNIYHPQ SINAADNSMS MPQSTLTLYR  120
QSAFVSYLRP AHSLCVNTGR QDLLKRSFNF LREIYEKRRE AANIPEAHEF DVSLQNKAAF  180
HHMLAERNRR IKLKQHFSLL HSLLPNNSKR DKYSVLSDIR KYMSELKRQV DELEQRNRAL  240
KESLRRNISN KERCSSLDLR HDENLTKIVY SSDEVVLRQS ENIPNQLDIR INVQIDPLSS  300
PNNLVIFLLE RLRELQLEVV SVEYSIQTFK FQAHLLIKQI EGEEWESSKW ENLAEVLRCT  360
FI

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP11631	3	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	9e-11	bHLH family protein