PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_12547g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 263aa    MW: 29380.9 Da    PI: 4.8128
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_12547g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.57e-182169355
            AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   y+GVr+++ +g+Wv+eIr p   g ++r++lg+++ +e+Aa a++ a+ +l+g
  MA_12547g0010 21 YRGVRRRR-WGKWVSEIRQP---GTKTRIWLGSYDKPEMAALAYDVAAFSLKG 69
                   9****777.**********8...325************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.9442077IPR001471AP2/ERF domain
SMARTSM003801.1E-312083IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-282078IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-212078IPR016177DNA-binding domain
PRINTSPR003679.0E-92132IPR001471AP2/ERF domain
PfamPF008474.7E-122169IPR001471AP2/ERF domain
CDDcd000182.26E-292179No hitNo description
PRINTSPR003679.0E-94359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MDACDGRKRN RSGKEKRIPM YRGVRRRRWG KWVSEIRQPG TKTRIWLGSY DKPEMAALAY  60
DVAAFSLKGK FALPNFPHLI HTLPTPASLD RTDIQYAAAK AALAICQQSY PEISAPVECP  120
NHSSPALVNV GGSMEAAVAT GADESRESIQ MNINVEETDH TRESIQMNIN VEETDHTSAN  180
FSYCRYEIDE DYASSVNLRI RTGSDQCSSL IGEELQQFDS PNFVMSMAEA LLLTPPRLDD  240
QVETDDYYGL DQATVSGILW SSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-152177360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-152177663ATERF1
3gcc_A4e-152177663ATERF1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1627RKRNRSGKEKRIPMYRGVRRRR
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.11e-20ERF family protein