PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_125022g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NAC

Protein Properties

Length: 305aa MW: 34842.3 Da PI: 5.1085

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_125022g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	108.7	6.9e-34	6	107	28	128
NAM 28 leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdW 121 l+ ++ i+ +d+y+++PwdLp ++ +e+e++fF++rd++ + r+nr+t+sgyWkatg+d++v++ + + +glkktLvfy+grap+g+ktdW MA_125022g0010 6 LRNFNYIPMLDLYRYDPWDLPGFASLGERELFFFVPRDERCWNnRGRPNRMTNSGYWKATGSDRSVHDDNAKCIGLKKTLVFYRGRAPRGQKTDW 100 4455789************77777999*****99986378******************999******************** PP NAM 122 vmheyrl 128 +m+eyrl MA_125022g0010 101 IMNEYRL 107 ***98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	40.428	1	126	IPR003441	NAC domain
SuperFamily	SSF101941	2.22E-39	9	126	IPR003441	NAC domain
Pfam	PF02365	1.0E-13	21	107	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MVQGKLRNFN YIPMLDLYRY DPWDLPGFAS LGERELFFFV PRDERCWNNR GRPNRMTNSG 60 YWKATGSDRS VHDDNAKCIG LKKTLVFYRG RAPRGQKTDW IMNEYRLPDY FDKPKKEAVL 120 CRIYRKATPL KWLEQRAMSQ ADVASSYEDL DCISQDFLLS PAEINDNKSV QEAKSICLWD 180 SVSVACQEIT TEPSSYPKDN VTKSDRTSSL GCAVDSGLME STVYGDFIDP DFQAFADDYK 240 RIGGFSSVIA ILNCPPSSHV ENCLEHLLTP AMAEKPRSVQ IPKLSIDFRN EEAVSDGNFN 300 PWMDL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-32	8	128	45	167	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-32	8	128	45	167	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-32	8	128	45	167	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-32	8	128	45	167	NO APICAL MERISTEM PROTEIN
4dul_A	1e-32	8	128	45	167	NAC domain-containing protein 19
4dul_B	1e-32	8	128	45	167	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008791987.1	4e-56	NAC domain-containing protein 22-like
Refseq	XP_015690518.1	1e-55	PREDICTED: NAC domain-containing protein 67 isoform X2
TrEMBL	A9NVV7	1e-154	A9NVV7_PICSI; Uncharacterized protein
STRING	XP_008791987.1	2e-55	(Phoenix dactylifera)
STRING	OB03G12640.1	4e-55	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	8e-54	NAC domain containing protein 36